| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/yqiancolumbia/ctk/shrimp_color_wrapper/1.0.0 (this tool) |
| shrimp_color_wrapper |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| rmapper-cs | not provided | binary |
| Additional information about this tool |
python '$__tool_directory__/shrimp_color_wrapper.py' '$input_target' '$input_query' '$output1'
#if $param.skip_or_full == "full"
'$param.spaced_seed' $param.seed_matches_per_window $param.seed_hit_taboo_length $param.seed_generation_taboo_length $param.seed_window_length $param.max_hits_per_read $param.max_read_length $param.kmer $param.sw_match_value $param.sw_mismatch_value $param.sw_gap_open_ref $param.sw_gap_open_query $param.sw_gap_ext_ref $param.sw_gap_ext_query $param.sw_crossover_penalty $param.sw_full_hit_threshold $param.sw_vector_hit_threshold
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_target: Ssuis.fasta param|skip_or_full: skip input_query: shrimp_cs_test1.csfasta |
output1: shrimp_cs_test1.out |
shrimp_cs_test1.csfasta Ssuis.fasta shrimp_cs_test1.out |