Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_bin_seqs/mothur_bin_seqs/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_bin_seqs/mothur_bin_seqs/1.36.1.0 |
mothur_bin_seqs |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$name' name.dat && ln -s '$group' group.dat && ln -s '$fasta' fasta.dat && ln -s '$otu' otu.dat && ln -s '$count' count.dat && echo 'bin.seqs( #if $name: name=name.dat, #end if #if $group: group=group.dat, #end if #if $label: label=${ str($label).replace(",","-") }, #end if #if $count: count=count.dat, #end if fasta=fasta.dat, list=otu.dat )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
fasta: amazon.fasta otu: amazon.an.list savelog: True |
name: value |
amazon.fasta amazon.an.list value |
Test-2 |
fasta: amazon.fasta otu: amazon.an.list name: amazon.names label: ['0.03', '0.05', '0.22'] group: amazon.groups savelog: True |
name: value |
amazon.fasta amazon.an.list amazon.names amazon.groups value |