| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/ete_treeviewer/ete_treeviewer/3.1.3+galaxy0 (this tool) |
| ete_treeviewer |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| curl | 8.10.1 | package |
| xmlstarlet | 1.6.1 | package |
| librsvg | 2.58.4 | package |
| Additional information about this tool |
curl http://etetoolkit.org/get_svg/
-X POST
--retry 10
#if $align.align_choice == 'yes'
-d "tree=\$(cat '$input_tree');fasta=\$(cat '$align.input_alignment');alg_type=$align.alg_type;$ncbitaxa" | xml format - > tree.svg
#else
-d "tree=\$(cat '$input_tree');$ncbitaxa" | xml format - > tree.svg
#end if
#if $output_format == 'png'
&& rsvg-convert -o tree.png tree.svg
&& mv tree.png '$output_tree_image'
#else
&& mv tree.svg '$output_tree_image'
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_tree: quicktree_alignment_VARL_NCBI.tre |
name: value |
quicktree_alignment_VARL_NCBI.tre value |
| Test-2 |
input_tree: example-tree-ncbi.tree align|input_alignment: example-alignment.fa align|align_choice: yes |
name: value |
example-tree-ncbi.tree example-alignment.fa value |
| Test-3 |
input_tree: example-tree-ncbi.tree align|input_alignment: example-alignment.fa align|alg_type: block align|align_choice: yes |
name: value |
example-tree-ncbi.tree example-alignment.fa value |
| Test-4 |
input_tree: quicktree_alignment_VARL.tre align|align_choice: no |
name: value |
quicktree_alignment_VARL.tre value |
| Test-5 |
input_tree: quicktree_alignment_VARL.tre output_format: png |
name: value |
quicktree_alignment_VARL.tre value |