Revision: 3:83f8b5ceff43

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/masigpro

Miscellaneous

Name: maSigPro

Description: Significant Gene Expression Profile Differences in Time Course Gene Expression Data

Id: masigpro

Guid: toolshed.g2.bx.psu.edu/repos/iuc/masigpro/masigpro/1.49.3.1+galaxy1

Version: 1.49.3.1+galaxy1

Version command string: echo $(R --version | grep version | grep -v GNU)", maSigPro version" $(R --vanilla --slave -e "library(maSigPro); cat(sessionInfo()\$otherPkgs\$maSigPro\$Version)" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/masigpro/masigpro/1.49.3.1+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/masigpro/masigpro/1.49.3.1+galaxy1 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/masigpro/masigpro/1.49.3.1

toolshed.g2.bx.psu.edu/repos/iuc/masigpro/masigpro/1.49.3.0

toolshed.g2.bx.psu.edu/repos/iuc/masigpro/masigpro/1.49.0.0

masigpro

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
coreutils	8.25	package
bioconductor-masigpro	1.49.3	package
r-optparse	1.3.2	package
sed	4.4	package

Functional tests

name	inputs	outputs	required files
Test-1	source|rep_time_1|files: ['control_2H.counts', 'treat_2H.counts'] source|source_selector: advanced source|rep_groups_0|files: ['control_1H.counts', 'control_2H.counts', 'control_3H.counts'] source|rep_repl_0|files: ['treat_3H_1.counts', 'treat_3H_2.counts'] source|rep_groups_1|name: Treatment source|rep_time_0|files: ['control_1H.counts', 'treat_1H.counts'] source|enable_output: True source|rep_groups_1|files: ['treat_1H.counts', 'treat_2H.counts', 'treat_3H_1.counts', 'treat_3H_2.counts'] source|rep_time_2|time: 3 source|rep_groups_0|name: Control source|rep_time_2|files: ['control_3H.counts', 'treat_3H_1.counts', 'treat_3H_2.counts'] source|rep_time_1|time: 2 source|rep_time_0|time: 1	attributes: name attributes: name attributes: name attributes: name	control_1H.counts treat_1H.counts control_2H.counts treat_2H.counts control_3H.counts treat_3H_1.counts treat_3H_2.counts control_1H.counts control_2H.counts control_3H.counts treat_1H.counts treat_2H.counts treat_3H_1.counts treat_3H_2.counts treat_3H_1.counts treat_3H_2.counts name
Test-2	source|source_selector: defaults source|edesign: edesign_out.txt source|data: data_out.txt	attributes: name attributes: name	edesign_out.txt data_out.txt name
Test-3	source|source_selector: defaults source|edesign: edesign_out.txt source|data: data_out.txt pdf|seeGenes|print_cluster: False	attributes: name attributes: name	edesign_out.txt data_out.txt name