| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_deunique_seqs/mothur_deunique_seqs/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_deunique_seqs/mothur_deunique_seqs/1.36.1.0 |
| mothur_deunique_seqs |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$fasta' fasta.dat &&
ln -s '$names' names.dat &&
echo 'deunique.seqs(
#if $inputtype.intype == "countfile":
count=names.dat,
#else
name=names.dat,
#end if
fasta=fasta.dat
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
fasta: amazon.unique.fasta inputtype|names: amazon.unique.names inputtype|intype: namesfile savelog: True |
name: value name: value |
amazon.unique.fasta amazon.unique.names value |
| Test-2 |
fasta: amazon.unique.fasta inputtype|names: amazon_withgroups.count_table inputtype|intype: countfile savelog: True |
name: value name: value name: value |
amazon.unique.fasta amazon_withgroups.count_table value |
| Test-3 |
fasta: amazon.unique.fasta inputtype|names: amazon.count_table inputtype|intype: countfile savelog: True |
name: value name: value name: value |
amazon.unique.fasta amazon.count_table value |