Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_deunique_seqs/mothur_deunique_seqs/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_deunique_seqs/mothur_deunique_seqs/1.36.1.0 |
mothur_deunique_seqs |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$fasta' fasta.dat && ln -s '$names' names.dat && echo 'deunique.seqs( #if $inputtype.intype == "countfile": count=names.dat, #else name=names.dat, #end if fasta=fasta.dat )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
fasta: amazon.unique.fasta inputtype|names: amazon.unique.names inputtype|intype: namesfile savelog: True |
name: value name: value |
amazon.unique.fasta amazon.unique.names value |
Test-2 |
fasta: amazon.unique.fasta inputtype|names: amazon_withgroups.count_table inputtype|intype: countfile savelog: True |
name: value name: value name: value |
amazon.unique.fasta amazon_withgroups.count_table value |
Test-3 |
fasta: amazon.unique.fasta inputtype|names: amazon.count_table inputtype|intype: countfile savelog: True |
name: value name: value name: value |
amazon.unique.fasta amazon.count_table value |