Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.3 |
toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.2 (this tool) |
toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.1 |
toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0 |
samtools_sort |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
samtools | 1.9 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input1: test_input_1_a.bam |
attributes: name |
test_input_1_a.bam name |
Test-2 |
prim_key_cond|prim_key_select: -n input1: test_input_1_a.bam |
attributes: name |
test_input_1_a.bam name |
Test-3 |
prim_key_cond|prim_key_select: -t input1: test_input_1_a.bam prim_key_cond|tag: RG |
attributes: name |
test_input_1_a.bam name |
Test-4 |
prim_key_cond|prim_key_select: -t input1: test_input_1_a.bam prim_key_cond|tag: RG prim_key_cond|sec_key_select: -n |
attributes: name |
test_input_1_a.bam name |
Test-5 |
prim_key_cond|prim_key_select: -t input1: test_input_1_a.bam prim_key_cond|tag: AS prim_key_cond|sec_key_select: |
attributes: name |
test_input_1_a.bam name |
Test-6 |
prim_key_cond|prim_key_select: -t input1: test_input_1_a.bam prim_key_cond|tag: FI |
attributes: name |
test_input_1_a.bam name |
Test-7 |
input1: 1.bam |
attributes: name |
1.bam name |
Test-8 |
prim_key_cond|prim_key_select: -n input1: 1.bam |
attributes: name |
1.bam name |