| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.3 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/samtools_sort/samtools_sort/2.0 |
| samtools_sort |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input1: test_input_1_a.bam |
attributes: name |
test_input_1_a.bam name |
| Test-2 |
prim_key_cond|prim_key_select: -n input1: test_input_1_a.bam |
attributes: name |
test_input_1_a.bam name |
| Test-3 |
prim_key_cond|prim_key_select: -t input1: test_input_1_a.bam prim_key_cond|tag: RG |
attributes: name |
test_input_1_a.bam name |
| Test-4 |
prim_key_cond|prim_key_select: -t input1: test_input_1_a.bam prim_key_cond|tag: RG prim_key_cond|sec_key_select: -n |
attributes: name |
test_input_1_a.bam name |
| Test-5 |
prim_key_cond|prim_key_select: -t input1: test_input_1_a.bam prim_key_cond|tag: AS prim_key_cond|sec_key_select: |
attributes: name |
test_input_1_a.bam name |
| Test-6 |
prim_key_cond|prim_key_select: -t input1: test_input_1_a.bam prim_key_cond|tag: FI |
attributes: name |
test_input_1_a.bam name |
| Test-7 |
input1: 1.bam |
attributes: name |
1.bam name |
| Test-8 |
prim_key_cond|prim_key_select: -n input1: 1.bam |
attributes: name |
1.bam name |