Repository revision
10:0cb889db0910

Repository 'anndata_export'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/anndata_export

Export AnnData and loom files tool metadata
Miscellaneous
Interconvert AnnData and Loom formats
anndata_export
toolshed.g2.bx.psu.edu/repos/iuc/anndata_export/anndata_export/0.7.5+galaxy1
0.7.5+galaxy1
python -c "import anndata as ad;print('anndata version: %s' % ad.__version__); import loompy;print('\nloompy version: %s' % loompy.__version__)"
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/anndata_export/anndata_export/0.10.3+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/anndata_export/anndata_export/0.7.5+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/anndata_export/anndata_export/0.7.5+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/anndata_export/anndata_export/0.7.4+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/anndata_export/anndata_export/0.6.22.post1+galaxy4
toolshed.g2.bx.psu.edu/repos/iuc/anndata_export/anndata_export/0.6.22.post1+galaxy3
toolshed.g2.bx.psu.edu/repos/iuc/anndata_export/anndata_export/0.6.22.post1+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/anndata_export/anndata_export/0.6.22.post1+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/anndata_export/anndata_export/0.6.22.post1+galaxy0
toolshed.g2.bx.psu.edu/repos/iuc/anndata_export/anndata_export/0.6.19+galaxy0
anndata_export
Requirements (dependencies defined in the <requirements> tag set)
name version type
anndata 0.7.5 package
loompy 2.0.17 package
Functional tests
name inputs outputs required files
Test-1 hd5_format|input: krumsiek11.h5ad
hd5_format|output_format: loom
hd5_format|filetype: anndata
name: value
krumsiek11.h5ad
value
Test-2 hd5_format|input: krumsiek11.h5ad
hd5_format|output_format: tabular
hd5_format|filetype: anndata
name: value
name: value
name: value
name: value
name: value
krumsiek11.h5ad
value
Test-3 hd5_format|input: loomtest.loom
hd5_format|filetype: loom
loomtest.loom