| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/velocyto_cli/velocyto_cli/0.17.17+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/velocyto_cli/velocyto_cli/0.17.17+galaxy0 (this tool) |
| velocyto_cli |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| velocyto.py | 0.17.17 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
main|sample: sample main|BAM: STARsolo_allSAMat.bam main|barcodes: barcodes.tsv main|gtffile: filtered3.Homo_sapiens.GRCh38.100.chr21.gtf main|M: False main|t: uint16 main|do: run10x |
name: value |
STARsolo_allSAMat.bam barcodes.tsv filtered3.Homo_sapiens.GRCh38.100.chr21.gtf value |
| Test-2 |
main|bamfiles: STARsolo_allSAMat.bam main|gtffile: filtered3.Homo_sapiens.GRCh38.100.chr21.gtf main|c: True main|U: True main|M: False main|t: uint16 main|do: run |
name: value |
STARsolo_allSAMat.bam filtered3.Homo_sapiens.GRCh38.100.chr21.gtf value |
| Test-3 |
main|bamfiles: ['STARsolo_allSAMat.bam', 'STARsolo_allSAMat_copy.bam'] main|gtffile: filtered3.Homo_sapiens.GRCh38.100.chr21.gtf main|c: True main|U: True main|M: False main|t: uint16 main|do: run |
name: value |
STARsolo_allSAMat.bam STARsolo_allSAMat_copy.bam filtered3.Homo_sapiens.GRCh38.100.chr21.gtf value |