Repository revision
0:a772e555b5a1

Repository 'ctat_discasm'
hg clone https://toolshed.g2.bx.psu.edu/repos/trinity_ctat/ctat_discasm

ctat_discasm tool metadata
Miscellaneous
ctat_discasm
Discordant and Unmapped Read De novo Transcriptome Assembly
ctat_discasm
toolshed.g2.bx.psu.edu/repos/trinity_ctat/ctat_discasm/ctat_discasm/1.0.0
1.0.0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/trinity_ctat/ctat_discasm/ctat_discasm/1.0.0 (this tool)
ctat_discasm
Requirements (dependencies defined in the <requirements> tag set)
name version type
discasm 0.1.3 package
Functional tests
name inputs outputs required files
Test-1 left_input: DISCASM/SF2/reads_1.fq.gz
chimeric: DISCASM/SF2/Chimeric.out.junction
bam: DISCASM/SF2/Aligned.sortedByCoord.out.bam
right_input: DISCASM/SF2/reads_2.fq.gz
attributes: name
DISCASM/SF2/Aligned.sortedByCoord.out.bam
DISCASM/SF2/Chimeric.out.junction
DISCASM/SF2/reads_1.fq.gz
DISCASM/SF2/reads_2.fq.gz
name
Test-2 left_input: DISCASM/SF1/reads.left.simPE.fq
chimeric: DISCASM/SF1/SF_out_chimeric.junction
bam: DISCASM/SF1/SF_out_aligned.bam
right_input: DISCASM/SF1/reads.right.simPE.fq
attributes: name
DISCASM/SF1/SF_out_aligned.bam
DISCASM/SF1/SF_out_chimeric.junction
DISCASM/SF1/reads.left.simPE.fq
DISCASM/SF1/reads.right.simPE.fq
name