Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/devteam/kraken_translate/kraken-translate/1.3.1 (this tool) |
toolshed.g2.bx.psu.edu/repos/devteam/kraken_translate/kraken-translate/1.2.3 |
toolshed.g2.bx.psu.edu/repos/devteam/kraken_translate/kraken-translate/1.2.1 |
toolshed.g2.bx.psu.edu/repos/devteam/kraken_translate/kraken-translate/1.2.0 |
toolshed.g2.bx.psu.edu/repos/devteam/kraken_translate/kraken-translate/1.1.0 |
kraken-translate |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
kraken | 1.1.1 | package |
Additional information about this tool |
if [ -d '${kraken_database.fields.path}/${kraken_database.fields.name}' ]; then export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}/${kraken_database.fields.name}'; else export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}'; fi && kraken-translate --db "\$KRAKEN_DEFAULT_DB" $mpa_format '${input}' > '${translated}'
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input: kraken-translate/kraken_translate_test1.tab mpa_format: False kraken_database: new_style_test_entry |
name: value |
kraken-translate/kraken_translate_test1.tab value |