| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/peterjc/coverage_stats/coverage_stats/0.1.0 |
| toolshed.g2.bx.psu.edu/repos/peterjc/coverage_stats/coverage_stats/0.0.5 (this tool) |
| toolshed.g2.bx.psu.edu/repos/peterjc/coverage_stats/coverage_stats/0.0.1 |
| coverage_stats |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.4.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_bam: ex1.bam max_depth: 123 |
out_tabular: ex1.coverage_stats.tabular |
ex1.bam ex1.coverage_stats.tabular |
| Test-2 |
input_bam: ex1.bam max_depth: 50 |
out_tabular: ex1.coverage_stats.md50.tabular |
ex1.bam ex1.coverage_stats.md50.tabular |
| Test-3 |
input_bam: coverage_test.bam max_depth: 123 |
out_tabular: coverage_test.coverage_stats.tabular |
coverage_test.bam coverage_test.coverage_stats.tabular |