Repository revision
8:d0569a198359

Repository 'treebest_best'
hg clone https://toolshed.g2.bx.psu.edu/repos/earlhaminst/treebest_best

TreeBeST best tool metadata
Miscellaneous
Generate a phylogenetic tree using CDS alignment and species tree
treebest_best
toolshed.g2.bx.psu.edu/repos/earlhaminst/treebest_best/treebest_best/1.9.2.post0
1.9.2.post0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/earlhaminst/treebest_best/treebest_best/1.9.2.post0 (this tool)
toolshed.g2.bx.psu.edu/repos/earlhaminst/treebest_best/treebest_best/1.9.2
treebest_best
Requirements (dependencies defined in the <requirements> tag set)
name version type
treebest 1.9.2.post0 package
Additional information about this tool
treebest best
-f $species_tree
$P
$S
$A
#if $C
    -C $C
#end if
$s
$g
$N
-c $c
-d $d
-l $l
-L $L
-b $b
#if $k.k_selector == 'yes'
    -k e
#else
    -k $k.k_value
#end if
#if $a.a_selector == 'yes'
    -a e
#else
    -a $a.a_value
#end if
-F $F
-p "Galaxy_TreeBest_Best"
$aln
> $output

    
None
False
Functional tests
name inputs outputs required files
Test-1 species_tree: species.nhx
aln: dna_alignment.fasta
F: 11
k|k_selector: yes
a|a_selector: yes
d: 0.15
l: 0.10
L: 0.20
b: 0.01
name: value
species.nhx
dna_alignment.fasta
value