| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.5+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.1.0 |
| FileFilter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.5 | package |
| openms-thirdparty | 2.5 | package |
| blast | 2.9.0 | package |
| openjdk | 8.0.192 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: FileFilter_1_input.mzML out_type: mzML rt: :30 mz: :1000 int: :20000 sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
| Test-2 |
in: FileFilter_1_input.mzML out_type: mzML rt: 30: mz: 1000: int: 100: sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
| Test-3 |
in: FileFilter_1_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 2 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
| Test-4 |
in: FileFilter_4_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: True spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_4_input.mzML value |
| Test-5 |
in: FileFilter_5_input.featureXML out_type: featureXML rt: :1000 mz: :480 int: :79000 sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: :0.6 consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: :3 f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_5_input.featureXML value |
| Test-6 |
in: FileFilter_5_input.featureXML out_type: featureXML rt: 1000: mz: 440: int: 70000: sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: 0.51: consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: 3: f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_5_input.featureXML value |
| Test-7 |
in: FileFilter_7_input.mzML out_type: mzML rt: : mz: : int: 7000: sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_7_input.mzML value |
| Test-8 |
in: FileFilter_8_input.consensusXML out_type: consensusXML rt: 600:1400 mz: 700:2300 int: 1100:6000 sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_8_input.consensusXML value |
| Test-9 |
in: FileFilter_9_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: SelectedIonMonitoring spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_9_input.mzML value |
| Test-10 |
in: FileFilter_10_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: Collision-induced dissociation spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_10_input.mzML value |
| Test-11 |
in: FileFilter_11_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: Plasma desorption spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_11_input.mzML value |
| Test-12 |
in: FileFilter_12_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: True peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_12_input.mzML value |
| Test-13 |
in: FileFilter_13_input.consensusXML out_type: featureXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: 2 consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_13_input.consensusXML value |
| Test-14 |
in: FileFilter_14_input.consensusXML out_type: consensusXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: 0 2 consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_14_input.consensusXML value |
| Test-15 |
in: FileFilter_15_input.featureXML out_type: featureXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: "Oxidation" id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: True id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_15_input.featureXML value |
| Test-16 |
in: FileFilter_15_input.featureXML out_type: featureXML rt: 3000:4000 mz: 400:600 int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: "Oxidation" id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: True id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_15_input.featureXML value |
| Test-17 |
in: FileFilter_15_input.featureXML out_type: featureXML rt: 3000:4000 mz: 400:600 int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: True id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_15_input.featureXML value |
| Test-18 |
in: FileFilter_18_input.consensusXML out_type: consensusXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: "Oxidation" id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: True id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_18_input.consensusXML value |
| Test-19 |
in: FileFilter_18_input.consensusXML out_type: consensusXML rt: 3000:4000 mz: 400:600 int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: True id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_18_input.consensusXML value |
| Test-20 |
in: FileFilter_15_input.featureXML out_type: featureXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: "YDL217C" id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: True id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_15_input.featureXML value |
| Test-21 |
in: FileFilter_15_input.featureXML out_type: featureXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: True id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: True id|remove_unassigned_ids: True id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_15_input.featureXML value |
| Test-22 |
in: FileFilter_22_input.consensusXML out_type: consensusXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: "distinct_charges" "gt" "1,2" id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_22_input.consensusXML value |
| Test-23 |
in: FileFilter_22_input.consensusXML out_type: consensusXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: "distinct_charges_size" "gt" "2" id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_22_input.consensusXML value |
| Test-24 |
in: FileFilter_22_input.consensusXML out_type: consensusXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: "DOESNOTEXIST" "lt" "whatever" id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_22_input.consensusXML value |
| Test-25 |
in: FileFilter_25_input.mzML.gz out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|blacklist: FileFilter_25_input.idXML id|rt: 1.0 id|mz: 0.05 id|blacklist_imperfect: True algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_25_input.mzML.gz FileFilter_25_input.idXML value |
| Test-26 |
in: FileFilter_25_input.mzML.gz out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|blacklist: FileFilter_25_input.idXML id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: True algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_25_input.mzML.gz FileFilter_25_input.idXML value |
| Test-27 |
in: FileFilter_28_input.mzML.gz out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: 832:836 peak_options|pc_mz_list: peak_options|level: 2 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_28_input.mzML.gz value |
| Test-28 |
in: FileFilter_28_input.mzML.gz out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: 832:836 peak_options|pc_mz_list: peak_options|level: 1 2 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_28_input.mzML.gz value |
| Test-29 |
in: FileFilter_28_input.mzML.gz out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: 832:836 peak_options|pc_mz_list: peak_options|level: 1 2 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_28_input.mzML.gz value |
| Test-30 |
in: FileFilter_31_34_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: :2 spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_31_34_input.mzML value |
| Test-31 |
in: FileFilter_31_34_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: :2 spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_31_34_input.mzML value |
| Test-32 |
in: FileFilter_31_34_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: :35 spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_31_34_input.mzML value |
| Test-33 |
in: FileFilter_31_34_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: :35 spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_31_34_input.mzML value |
| Test-34 |
in: FileFilter_1_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
| Test-35 |
in: FileFilter_1_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: False peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
| Test-36 |
in: FileFilter_1_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: linear peak_options|numpress|lossy_mass_accuracy: 0.0001 peak_options|numpress|intensity: slof peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
| Test-37 |
in: FileFilter_1_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: linear peak_options|numpress|lossy_mass_accuracy: 0.0001 peak_options|numpress|intensity: pic peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
| Test-38 |
in: FileFilter_40_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: positive spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_40_input.mzML value |
| Test-39 |
in: FileFilter_40_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: negative spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_40_input.mzML value |
| Test-40 |
in: FileFilter_40_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_40_input.mzML value |
| Test-41 |
in: FileFilter_43_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_43_input.mzML value |
| Test-42 |
in: FileFilter_43.tmp.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_43.tmp.mzML value |
| Test-43 |
in: FileFilter_44_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_44_input.mzML value |
| Test-44 |
in: FileFilter_45_input.featureXML out_type: featureXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: "YSFS" "STLIPPPSK(Label:13C(6)15N(2))" id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_45_input.featureXML value |
| Test-45 |
in: FileFilter_46_input.featureXML out_type: featureXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: "YSFS" "STLIPPPSK(Label:13C(6)15N(2))" id|sequence_comparison_method: exact id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_46_input.featureXML value |
| Test-46 |
in: FileFilter_47_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|file: FileFilter_47_input_select.mzML spectra|blackorwhitelist|similarity_threshold: 0.9 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_47_input.mzML FileFilter_47_input_select.mzML value |
| Test-47 |
in: FileFilter_47_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|file: FileFilter_47_input_select.mzML spectra|blackorwhitelist|similarity_threshold: 0.9 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: False feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_47_input.mzML FileFilter_47_input_select.mzML value |
| Test-48 |
in: FileFilter_49_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: True peak_options|numpress|masstime: linear peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: pic peak_options|numpress|float_da: slof spectra|remove_zoom: False spectra|remove_mode: spectra|remove_activation: spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: spectra|select_activation: spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_49_input.mzML value |