Repository revision
12:daec99595337

Repository 'openms_filefilter'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter

FileFilter tool metadata
Miscellaneous
FileFilter
Extracts or manipulates portions of data from peak, feature or consensus-feature files.
FileFilter
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.5+galaxy0
2.5+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.6+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.5+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.3.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.2.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.1.0
FileFilter
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.5 package
openms-thirdparty 2.5 package
blast 2.9.0 package
openjdk 8.0.192 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: FileFilter_1_input.mzML
out_type: mzML
rt: :30
mz: :1000
int: :20000
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_1_input.mzML
value
Test-2 in: FileFilter_1_input.mzML
out_type: mzML
rt: 30:
mz: 1000:
int: 100:
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_1_input.mzML
value
Test-3 in: FileFilter_1_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 2
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_1_input.mzML
value
Test-4 in: FileFilter_4_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: True
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_4_input.mzML
value
Test-5 in: FileFilter_5_input.featureXML
out_type: featureXML
rt: :1000
mz: :480
int: :79000
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :0.6
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :3
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_5_input.featureXML
value
Test-6 in: FileFilter_5_input.featureXML
out_type: featureXML
rt: 1000:
mz: 440:
int: 70000:
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: 0.51:
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: 3:
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_5_input.featureXML
value
Test-7 in: FileFilter_7_input.mzML
out_type: mzML
rt: :
mz: :
int: 7000:
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_7_input.mzML
value
Test-8 in: FileFilter_8_input.consensusXML
out_type: consensusXML
rt: 600:1400
mz: 700:2300
int: 1100:6000
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_8_input.consensusXML
value
Test-9 in: FileFilter_9_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode: SelectedIonMonitoring
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_9_input.mzML
value
Test-10 in: FileFilter_10_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation: Collision-induced dissociation
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_10_input.mzML
value
Test-11 in: FileFilter_11_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation: Plasma desorption
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_11_input.mzML
value
Test-12 in: FileFilter_12_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: True
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_12_input.mzML
value
Test-13 in: FileFilter_13_input.consensusXML
out_type: featureXML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map: 2
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_13_input.consensusXML
value
Test-14 in: FileFilter_14_input.consensusXML
out_type: consensusXML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map: 0 2
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_14_input.consensusXML
value
Test-15 in: FileFilter_15_input.featureXML
out_type: featureXML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist: "Oxidation"
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: True
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_15_input.featureXML
value
Test-16 in: FileFilter_15_input.featureXML
out_type: featureXML
rt: 3000:4000
mz: 400:600
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist: "Oxidation"
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: True
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_15_input.featureXML
value
Test-17 in: FileFilter_15_input.featureXML
out_type: featureXML
rt: 3000:4000
mz: 400:600
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: True
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_15_input.featureXML
value
Test-18 in: FileFilter_18_input.consensusXML
out_type: consensusXML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist: "Oxidation"
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: True
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_18_input.consensusXML
value
Test-19 in: FileFilter_18_input.consensusXML
out_type: consensusXML
rt: 3000:4000
mz: 400:600
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: True
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_18_input.consensusXML
value
Test-20 in: FileFilter_15_input.featureXML
out_type: featureXML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist: "YDL217C"
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: True
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_15_input.featureXML
value
Test-21 in: FileFilter_15_input.featureXML
out_type: featureXML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: True
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: True
id|remove_unassigned_ids: True
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_15_input.featureXML
value
Test-22 in: FileFilter_22_input.consensusXML
out_type: consensusXML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta: "distinct_charges" "gt" "1,2"
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_22_input.consensusXML
value
Test-23 in: FileFilter_22_input.consensusXML
out_type: consensusXML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta: "distinct_charges_size" "gt" "2"
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_22_input.consensusXML
value
Test-24 in: FileFilter_22_input.consensusXML
out_type: consensusXML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta: "DOESNOTEXIST" "lt" "whatever"
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_22_input.consensusXML
value
Test-25 in: FileFilter_25_input.mzML.gz
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|blacklist: FileFilter_25_input.idXML
id|rt: 1.0
id|mz: 0.05
id|blacklist_imperfect: True
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_25_input.mzML.gz
FileFilter_25_input.idXML
value
Test-26 in: FileFilter_25_input.mzML.gz
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|blacklist: FileFilter_25_input.idXML
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: True
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_25_input.mzML.gz
FileFilter_25_input.idXML
value
Test-27 in: FileFilter_28_input.mzML.gz
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: 832:836
peak_options|pc_mz_list:
peak_options|level: 2
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_28_input.mzML.gz
value
Test-28 in: FileFilter_28_input.mzML.gz
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: 832:836
peak_options|pc_mz_list:
peak_options|level: 1 2
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_28_input.mzML.gz
value
Test-29 in: FileFilter_28_input.mzML.gz
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: 832:836
peak_options|pc_mz_list:
peak_options|level: 1 2
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_28_input.mzML.gz
value
Test-30 in: FileFilter_31_34_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :2
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_31_34_input.mzML
value
Test-31 in: FileFilter_31_34_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :2
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_31_34_input.mzML
value
Test-32 in: FileFilter_31_34_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :35
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_31_34_input.mzML
value
Test-33 in: FileFilter_31_34_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :35
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_31_34_input.mzML
value
Test-34 in: FileFilter_1_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_1_input.mzML
value
Test-35 in: FileFilter_1_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: False
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_1_input.mzML
value
Test-36 in: FileFilter_1_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: linear
peak_options|numpress|lossy_mass_accuracy: 0.0001
peak_options|numpress|intensity: slof
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_1_input.mzML
value
Test-37 in: FileFilter_1_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: linear
peak_options|numpress|lossy_mass_accuracy: 0.0001
peak_options|numpress|intensity: pic
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_1_input.mzML
value
Test-38 in: FileFilter_40_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity: positive
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_40_input.mzML
value
Test-39 in: FileFilter_40_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity: negative
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_40_input.mzML
value
Test-40 in: FileFilter_40_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_40_input.mzML
value
Test-41 in: FileFilter_43_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_43_input.mzML
value
Test-42 in: FileFilter_43.tmp.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_43.tmp.mzML
value
Test-43 in: FileFilter_44_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_44_input.mzML
value
Test-44 in: FileFilter_45_input.featureXML
out_type: featureXML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist: "YSFS" "STLIPPPSK(Label:13C(6)15N(2))"
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_45_input.featureXML
value
Test-45 in: FileFilter_46_input.featureXML
out_type: featureXML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist: "YSFS" "STLIPPPSK(Label:13C(6)15N(2))"
id|sequence_comparison_method: exact
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_46_input.featureXML
value
Test-46 in: FileFilter_47_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|file: FileFilter_47_input_select.mzML
spectra|blackorwhitelist|similarity_threshold: 0.9
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_47_input.mzML
FileFilter_47_input_select.mzML
value
Test-47 in: FileFilter_47_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: False
peak_options|numpress|masstime: none
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: none
peak_options|numpress|float_da: none
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|file: FileFilter_47_input_select.mzML
spectra|blackorwhitelist|similarity_threshold: 0.9
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: False
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_47_input.mzML
FileFilter_47_input_select.mzML
value
Test-48 in: FileFilter_49_input.mzML
out_type: mzML
rt: :
mz: :
int: :
sort: False
peak_options|sn: 0.0
peak_options|rm_pc_charge:
peak_options|pc_mz_range: :
peak_options|pc_mz_list:
peak_options|level: 1 2 3
peak_options|sort_peaks: False
peak_options|no_chromatograms: False
peak_options|remove_chromatograms: False
peak_options|remove_empty: False
peak_options|mz_precision: 64
peak_options|int_precision: 32
peak_options|indexed_file: True
peak_options|zlib_compression: True
peak_options|numpress|masstime: linear
peak_options|numpress|lossy_mass_accuracy: -1.0
peak_options|numpress|intensity: pic
peak_options|numpress|float_da: slof
spectra|remove_zoom: False
spectra|remove_mode:
spectra|remove_activation:
spectra|remove_collision_energy: :
spectra|remove_isolation_window_width: :
spectra|select_zoom: False
spectra|select_mode:
spectra|select_activation:
spectra|select_collision_energy: :
spectra|select_isolation_window_width: :
spectra|select_polarity:
spectra|blackorwhitelist|similarity_threshold: -1.0
spectra|blackorwhitelist|rt: 0.01
spectra|blackorwhitelist|mz: 0.01
spectra|blackorwhitelist|use_ppm_tolerance: false
spectra|blackorwhitelist|blacklist: True
feature|q: :
consensus|map:
consensus|map_and: False
consensus|blackorwhitelist|blacklist: True
consensus|blackorwhitelist|maps:
consensus|blackorwhitelist|rt: 60.0
consensus|blackorwhitelist|mz: 0.01
consensus|blackorwhitelist|use_ppm_tolerance: False
f_and_c|charge: :
f_and_c|size: :
f_and_c|remove_meta:
id|remove_clashes: False
id|keep_best_score_id: False
id|sequences_whitelist:
id|sequence_comparison_method: substring
id|accessions_whitelist:
id|remove_annotated_features: False
id|remove_unannotated_features: False
id|remove_unassigned_ids: False
id|rt: 0.1
id|mz: 0.001
id|blacklist_imperfect: False
algorithm|SignalToNoise|max_intensity: -1
algorithm|SignalToNoise|auto_max_stdev_factor: 3.0
algorithm|SignalToNoise|auto_max_percentile: 95
algorithm|SignalToNoise|auto_mode: 0
algorithm|SignalToNoise|win_len: 200.0
algorithm|SignalToNoise|bin_count: 30
algorithm|SignalToNoise|min_required_elements: 10
algorithm|SignalToNoise|noise_for_empty_window: 1e+20
algorithm|SignalToNoise|write_log_messages: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
FileFilter_49_input.mzML
value