Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.8+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.6+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.5+galaxy0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.3.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.2.0 |
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_filefilter/FileFilter/2.1.0 |
FileFilter |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
openms | 2.8 | package |
openms-thirdparty | 2.8 | package |
omssa | 2.1.9 | package |
blast | 2.13.0 | package |
ctdopts | 1.4 | package |
Additional information about this tool |
#def quote(s): #set $s = [ _ for _ in $s.split(" ") if _ != "" ] #set $q = False #for $i, $p in enumerate($s): #if $p == "": #continue #end if #if $p.startswith('"'): #set $q = True #end if ## #if p.startswith('-'): ## #set p = "\\" + p ## #elif p.startswith('"-'): ## #set p = "\\" + p[1:] ## #end if #if not $q: #set $s[i] = '"%s"' % p #end if #if $p.endswith('"'): #set $q = False #end if #end for #return " ".join($s) #end def #def oms2gxyext(o) #set m={'txt': 'txt', 'tsv': 'tabular', 'bioml': 'xml', 'consensusXML': 'consensusxml', 'csv': 'csv', 'dta': 'dta', 'dta2d': 'dta2d', 'edta': 'edta', 'fa': 'fasta', 'fas': 'fasta', 'fasta': 'fasta', 'FASTA': 'fasta', 'featureXML': 'featurexml', 'featurexml': 'featurexml', 'html': 'html', 'HTML': 'html', 'idXML': 'idxml', 'json': 'json', 'kroenik': 'kroenik', 'mascotXML': 'mascotxml', 'mgf': 'mgf', 'mrm': 'mrm', 'ms': 'sirius.ms', 'ms2': 'ms2', 'msp': 'msp', 'mzData': 'mzdata', 'mzid': 'mzid', 'mzML': 'mzml', 'mzml': 'mzml', 'mzq': 'mzq', 'mzQC': 'mzqc', 'mzTab': 'mztab', 'mzXML': 'mzxml', 'novor': 'txt', 'obo': 'obo', 'oms': 'sqlite', 'omssaXML': 'idxml', 'osw': 'osw', 'OSW': 'osw', 'params': 'txt', 'paramXML': 'paramxml', 'peplist': 'peplist', 'pep.xml': 'pepxml', 'pepXML': 'pepxml', 'png': 'png', 'PNG': 'png', 'protXML': 'protxml', 'psms': 'psms', 'pqp': 'pqp', 'qcML': 'qcml', 'spec.xml': 'spec.xml', 'splib': 'splib', 'sqMass': 'sqmass', 'tandem.xml': 'tandem', 'trafoXML': 'trafoxml', 'traML': 'traml', 'TraML': 'traml', 'tab': 'tabular', 'raw': 'thermo.raw', 'xls': 'tsv', 'XML': 'xml', 'xml': 'xml', 'xquest.xml': 'xquest.xml', 'xsd': 'xml'} #return m[o] #end def #def gxy2omsext(g) #set m={'txt': 'txt', 'tabular': 'tsv', 'xml': 'bioml', 'consensusxml': 'consensusXML', 'csv': 'csv', 'dta': 'dta', 'dta2d': 'dta2d', 'edta': 'edta', 'fasta': 'fa', 'featurexml': 'featureXML', 'html': 'html', 'idxml': 'idXML', 'json': 'json', 'kroenik': 'kroenik', 'mascotxml': 'mascotXML', 'mgf': 'mgf', 'mrm': 'mrm', 'sirius.ms': 'ms', 'ms2': 'ms2', 'msp': 'msp', 'mzdata': 'mzData', 'mzid': 'mzid', 'mzml': 'mzML', 'mzq': 'mzq', 'mzqc': 'mzQC', 'mztab': 'mzTab', 'mzxml': 'mzXML', 'obo': 'obo', 'sqlite': 'oms', 'osw': 'osw', 'paramxml': 'paramXML', 'peff': 'fasta', 'peplist': 'peplist', 'pepxml': 'pep.xml', 'png': 'png', 'protxml': 'protXML', 'psms': 'psms', 'pqp': 'pqp', 'qcml': 'qcML', 'spec.xml': 'spec.xml', 'splib': 'splib', 'sqmass': 'sqMass', 'tandem': 'tandem.xml', 'trafoxml': 'trafoXML', 'traml': 'traML', 'thermo.raw': 'raw', 'tsv': 'xls', 'xquest.xml': 'xquest.xml'} #return m[g] #end def #import re ## Preprocessing mkdir in && ln -s '$in' 'in/${re.sub("[^\w\-_]", "_", $in.element_identifier)}.$gxy2omsext($in.ext)' && mkdir out && #if $spectra.blackorwhitelist.file: mkdir spectra.blackorwhitelist.file && ln -s '$spectra.blackorwhitelist.file' 'spectra.blackorwhitelist.file/${re.sub("[^\w\-_]", "_", $spectra.blackorwhitelist.file.element_identifier)}.$gxy2omsext($spectra.blackorwhitelist.file.ext)' && #end if #if $consensus.blackorwhitelist.file: mkdir consensus.blackorwhitelist.file && ln -s '$consensus.blackorwhitelist.file' 'consensus.blackorwhitelist.file/${re.sub("[^\w\-_]", "_", $consensus.blackorwhitelist.file.element_identifier)}.$gxy2omsext($consensus.blackorwhitelist.file.ext)' && #end if #if $id.blacklist: mkdir id.blacklist && ln -s '$id.blacklist' 'id.blacklist/${re.sub("[^\w\-_]", "_", $id.blacklist.element_identifier)}.$gxy2omsext($id.blacklist.ext)' && #end if ## Main program call set -o pipefail && FileFilter -write_ctd ./ && python3 '$__tool_directory__/fill_ctd.py' 'FileFilter.ctd' '$args_json' '$hardcoded_json' && FileFilter -ini FileFilter.ctd -in 'in/${re.sub("[^\w\-_]", "_", $in.element_identifier)}.$gxy2omsext($in.ext)' -out 'out/output.${out_type}' #if $spectra.blackorwhitelist.file: -spectra:blackorwhitelist:file 'spectra.blackorwhitelist.file/${re.sub("[^\w\-_]", "_", $spectra.blackorwhitelist.file.element_identifier)}.$gxy2omsext($spectra.blackorwhitelist.file.ext)' #end if #if $consensus.blackorwhitelist.file: -consensus:blackorwhitelist:file 'consensus.blackorwhitelist.file/${re.sub("[^\w\-_]", "_", $consensus.blackorwhitelist.file.element_identifier)}.$gxy2omsext($consensus.blackorwhitelist.file.ext)' #end if #if $id.blacklist: -id:blacklist 'id.blacklist/${re.sub("[^\w\-_]", "_", $id.blacklist.element_identifier)}.$gxy2omsext($id.blacklist.ext)' #end if ## Postprocessing && mv 'out/output.${out_type}' '$out' #if "ctd_out_FLAG" in $OPTIONAL_OUTPUTS && mv 'FileFilter.ctd' '$ctd_out' #end if
Functional tests |
name | inputs | outputs | required files |
Test-1 |
in: FileFilter_1_input.mzML out_type: mzML rt: :30 mz: :1000 int: :20000 sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
Test-2 |
in: FileFilter_1_input.mzML out_type: mzML rt: 30: mz: 1000: int: 100: sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
Test-3 |
in: FileFilter_1_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 2 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
Test-4 |
in: FileFilter_4_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: True spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_4_input.mzML value |
Test-5 |
in: FileFilter_5_input.featureXML out_type: featureXML rt: :1000 mz: :480 int: :79000 sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: :0.6 consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: :3 f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_5_input.featureXML value |
Test-6 |
in: FileFilter_5_input.featureXML out_type: featureXML rt: 1000: mz: 440: int: 70000: sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: 0.51: consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: 3: f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_5_input.featureXML value |
Test-7 |
in: FileFilter_7_input.mzML out_type: mzML rt: : mz: : int: 7000: sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_7_input.mzML value |
Test-8 |
in: FileFilter_8_input.consensusXML out_type: consensusXML rt: 600:1400 mz: 700:2300 int: 1100:6000 sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_8_input.consensusXML value |
Test-9 |
in: FileFilter_9_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: SelectedIonMonitoring spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_9_input.mzML value |
Test-10 |
in: FileFilter_10_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: Collision-induced dissociation spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_10_input.mzML value |
Test-11 |
in: FileFilter_11_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: Plasma desorption spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_11_input.mzML value |
Test-12 |
in: FileFilter_12_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: True peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_12_input.mzML value |
Test-13 |
in: FileFilter_13_input.consensusXML out_type: featureXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: 2 consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_13_input.consensusXML value |
Test-14 |
in: FileFilter_14_input.consensusXML out_type: consensusXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: 0 2 consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_14_input.consensusXML value |
Test-15 |
in: FileFilter_15_input.featureXML out_type: featureXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: "Oxidation" id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: True id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_15_input.featureXML value |
Test-16 |
in: FileFilter_15_input.featureXML out_type: featureXML rt: 3000:4000 mz: 400:600 int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: "Oxidation" id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: True id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_15_input.featureXML value |
Test-17 |
in: FileFilter_15_input.featureXML out_type: featureXML rt: 3000:4000 mz: 400:600 int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: True id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_15_input.featureXML value |
Test-18 |
in: FileFilter_18_input.consensusXML out_type: consensusXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: "Oxidation" id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: True id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_18_input.consensusXML value |
Test-19 |
in: FileFilter_18_input.consensusXML out_type: consensusXML rt: 3000:4000 mz: 400:600 int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: True id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_18_input.consensusXML value |
Test-20 |
in: FileFilter_15_input.featureXML out_type: featureXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: "YDL217C" id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: True id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_15_input.featureXML value |
Test-21 |
in: FileFilter_15_input.featureXML out_type: featureXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: True id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: True id|remove_unassigned_ids: True id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_15_input.featureXML value |
Test-22 |
in: FileFilter_22_input.consensusXML out_type: consensusXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: "distinct_charges" "gt" "1,2" id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_22_input.consensusXML value |
Test-23 |
in: FileFilter_22_input.consensusXML out_type: consensusXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: "distinct_charges_size" "gt" "2" id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_22_input.consensusXML value |
Test-24 |
in: FileFilter_22_input.consensusXML out_type: consensusXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: "DOESNOTEXIST" "lt" "whatever" id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_22_input.consensusXML value |
Test-25 |
in: FileFilter_25_input.mzML.gz out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|blacklist: FileFilter_25_input.idXML id|rt: 1.0 id|mz: 0.05 id|blacklist_imperfect: True algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_25_input.mzML.gz FileFilter_25_input.idXML value |
Test-26 |
in: FileFilter_25_input.mzML.gz out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|blacklist: FileFilter_25_input.idXML id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: True algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_25_input.mzML.gz FileFilter_25_input.idXML value |
Test-27 |
in: FileFilter_28_input.mzML.gz out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: 832:836 peak_options|pc_mz_list: peak_options|level: 2 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_28_input.mzML.gz value |
Test-28 |
in: FileFilter_28_input.mzML.gz out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: 832:836 peak_options|pc_mz_list: peak_options|level: 1 2 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_28_input.mzML.gz value |
Test-29 |
in: FileFilter_28_input.mzML.gz out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: 832:836 peak_options|pc_mz_list: peak_options|level: 1 2 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_28_input.mzML.gz value |
Test-30 |
in: FileFilter_31_34_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: :2 spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_31_34_input.mzML value |
Test-31 |
in: FileFilter_31_34_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: :2 spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_31_34_input.mzML value |
Test-32 |
in: FileFilter_31_34_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: :35 spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_31_34_input.mzML value |
Test-33 |
in: FileFilter_31_34_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: :35 spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_31_34_input.mzML value |
Test-34 |
in: FileFilter_1_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
Test-35 |
in: FileFilter_1_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: False peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
Test-36 |
in: FileFilter_1_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: linear peak_options|numpress|lossy_mass_accuracy: 0.0001 peak_options|numpress|intensity: slof peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
Test-37 |
in: FileFilter_1_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: linear peak_options|numpress|lossy_mass_accuracy: 0.0001 peak_options|numpress|intensity: pic peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_1_input.mzML value |
Test-38 |
in: FileFilter_40_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: positive spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_40_input.mzML value |
Test-39 |
in: FileFilter_40_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: negative spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_40_input.mzML value |
Test-40 |
in: FileFilter_40_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_40_input.mzML value |
Test-41 |
in: FileFilter_43_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_43_input.mzML value |
Test-42 |
in: FileFilter_43.tmp.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_43.tmp.mzML value |
Test-43 |
in: FileFilter_44_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_44_input.mzML value |
Test-44 |
in: FileFilter_45_input.featureXML out_type: featureXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: "YSFS" "STLIPPPSK(Label:13C(6)15N(2))" id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_45_input.featureXML value |
Test-45 |
in: FileFilter_46_input.featureXML out_type: featureXML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: "YSFS" "STLIPPPSK(Label:13C(6)15N(2))" id|sequence_comparison_method: exact id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_46_input.featureXML value |
Test-46 |
in: FileFilter_47_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|file: FileFilter_47_input_select.mzML spectra|blackorwhitelist|similarity_threshold: 0.9 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_47_input.mzML FileFilter_47_input_select.mzML value |
Test-47 |
in: FileFilter_47_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: False peak_options|numpress|masstime: none peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: none peak_options|numpress|float_da: none spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|file: FileFilter_47_input_select.mzML spectra|blackorwhitelist|similarity_threshold: 0.9 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: False feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_47_input.mzML FileFilter_47_input_select.mzML value |
Test-48 |
in: FileFilter_49_input.mzML out_type: mzML rt: : mz: : int: : sort: False peak_options|sn: 0.0 peak_options|rm_pc_charge: peak_options|pc_mz_range: : peak_options|pc_mz_list: peak_options|level: 1 2 3 peak_options|sort_peaks: False peak_options|no_chromatograms: False peak_options|remove_chromatograms: False peak_options|remove_empty: False peak_options|mz_precision: 64 peak_options|int_precision: 32 peak_options|indexed_file: True peak_options|zlib_compression: True peak_options|numpress|masstime: linear peak_options|numpress|lossy_mass_accuracy: -1.0 peak_options|numpress|intensity: pic peak_options|numpress|float_da: slof spectra|remove_zoom: False spectra|remove_mode: None spectra|remove_activation: None spectra|remove_collision_energy: : spectra|remove_isolation_window_width: : spectra|select_zoom: False spectra|select_mode: None spectra|select_activation: None spectra|select_collision_energy: : spectra|select_isolation_window_width: : spectra|select_polarity: None spectra|replace_pc_charge: : spectra|blackorwhitelist|similarity_threshold: -1.0 spectra|blackorwhitelist|rt: 0.01 spectra|blackorwhitelist|mz: 0.01 spectra|blackorwhitelist|use_ppm_tolerance: false spectra|blackorwhitelist|blacklist: True feature|q: : consensus|map: consensus|map_and: False consensus|blackorwhitelist|blacklist: True consensus|blackorwhitelist|maps: consensus|blackorwhitelist|rt: 60.0 consensus|blackorwhitelist|mz: 0.01 consensus|blackorwhitelist|use_ppm_tolerance: False f_and_c|charge: : f_and_c|size: : f_and_c|remove_meta: id|remove_clashes: False id|keep_best_score_id: False id|sequences_whitelist: id|sequence_comparison_method: substring id|accessions_whitelist: id|remove_annotated_features: False id|remove_unannotated_features: False id|remove_unassigned_ids: False id|rt: 0.1 id|mz: 0.001 id|blacklist_imperfect: False algorithm|SignalToNoise|max_intensity: -1 algorithm|SignalToNoise|auto_max_stdev_factor: 3.0 algorithm|SignalToNoise|auto_max_percentile: 95 algorithm|SignalToNoise|auto_mode: 0 algorithm|SignalToNoise|win_len: 200.0 algorithm|SignalToNoise|bin_count: 30 algorithm|SignalToNoise|min_required_elements: 10 algorithm|SignalToNoise|noise_for_empty_window: 1e+20 algorithm|SignalToNoise|write_log_messages: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
FileFilter_49_input.mzML value |