| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/delly_cnv/delly_cnv/0.9.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/delly_cnv/delly_cnv/0.8.7+galaxy0 (this tool) |
| delly_cnv |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| delly | 0.8.7 | package |
| bcftools | 1.10.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: normal.bam generic|genome: genome.fasta generic|mappability: map.fasta oo|out: ['cnv', 'coverage', 'log'] |
name: value name: value name: value |
normal.bam genome.fasta map.fasta value |
| Test-2 |
input: normal.bam generic|genome: genome.fasta generic|quality: 11 generic|mappability: map.fasta generic|ploidy: 3 cnv|sdrd: 3 cnv|cnoffset: 0.2 cnv|cnvsize: 1001 cnv|segmentation: True read|windowsize: 10001 read|windowoffset: 9999 read|fractionwindow: 0.24 read|adaptivewindowing: True gc|scanwindow: 10001 gc|fractionunique: 0.79 gc|madcutoff: 2 gc|percentile: 0.0006 gc|nowindowselection: True oo|out: ['cnv', 'coverage', 'log'] |
name: value name: value name: value |
normal.bam genome.fasta map.fasta value |