| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.2+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.2+galaxy0 |
| meryl |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| merqury | 1.1 | package |
| meryl | 1.3 | package |
| tar | 1.34 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
operation_type|input_reads: child.fasta operation_type|options_kmer_size|input_kmer_size: 7 operation_type|options_kmer_size|kmer_size: provide operation_type|command_type: count-kmers |
name: value |
child.fasta value |
| Test-2 |
operation_type|filter_operations: less-than operation_type|input_meryldb_02: read-db.meryldb operation_type|N: 100 operation_type|command_type: filter-kmers |
name: value |
read-db.meryldb value |
| Test-3 |
operation_type|filter_operations: greater-than operation_type|input_meryldb_02: read-db.meryldb operation_type|N: 80 operation_type|command_type: filter-kmers |
name: value |
read-db.meryldb value |
| Test-4 |
operation_type|filter_operations: equal-to operation_type|input_meryldb_02: read-db.meryldb operation_type|N: 100 operation_type|command_type: filter-kmers |
name: value |
read-db.meryldb value |
| Test-5 |
operation_type|filter_operations: not-equal-to operation_type|input_meryldb_02: read-db.meryldb operation_type|N: 100 operation_type|command_type: filter-kmers |
name: value |
read-db.meryldb value |
| Test-6 |
operation_type|arithmetic_operations: increase operation_type|input_meryldb_02: read-db.meryldb operation_type|X: 100000 operation_type|command_type: arithmetic-kmers |
name: value |
read-db.meryldb value |
| Test-7 |
operation_type|arithmetic_operations: decrease operation_type|input_meryldb_02: read-db.meryldb operation_type|X: 100 operation_type|command_type: arithmetic-kmers |
name: value |
read-db.meryldb value |
| Test-8 |
operation_type|arithmetic_operations: multiply operation_type|input_meryldb_02: read-db.meryldb operation_type|X: 3 operation_type|command_type: arithmetic-kmers |
name: value |
read-db.meryldb value |
| Test-9 |
operation_type|arithmetic_operations: divide operation_type|input_meryldb_02: read-db.meryldb operation_type|X: 2 operation_type|command_type: arithmetic-kmers |
name: value |
read-db.meryldb value |
| Test-10 |
operation_type|arithmetic_operations: divide-round operation_type|input_meryldb_02: read-db.meryldb operation_type|X: 2 operation_type|command_type: arithmetic-kmers |
name: value |
read-db.meryldb value |
| Test-11 |
operation_type|arithmetic_operations: modulo operation_type|input_meryldb_02: read-db.meryldb operation_type|X: 3 operation_type|command_type: arithmetic-kmers |
name: value |
read-db.meryldb value |
| Test-12 |
operation_type|groups_operations: union operation_type|input_meryldb_02: output_02.read-db.meryldb operation_type|input_meryldb_03: output_03.read-db.meryldb operation_type|command_type: groups-kmers |
name: value |
output_02.read-db.meryldb output_03.read-db.meryldb value |
| Test-13 |
operation_type|groups_operations: union-min operation_type|input_meryldb_02: output_02.read-db.meryldb operation_type|input_meryldb_03: output_03.read-db.meryldb operation_type|command_type: groups-kmers |
name: value |
output_02.read-db.meryldb output_03.read-db.meryldb value |
| Test-14 |
operation_type|groups_operations: union-max operation_type|input_meryldb_02: output_02.read-db.meryldb operation_type|input_meryldb_03: output_03.read-db.meryldb operation_type|command_type: groups-kmers |
name: value |
output_02.read-db.meryldb output_03.read-db.meryldb value |
| Test-15 |
operation_type|groups_operations: union-sum operation_type|input_meryldb_02: output_02.read-db.meryldb operation_type|input_meryldb_03: output_03.read-db.meryldb operation_type|command_type: groups-kmers |
name: value |
output_02.read-db.meryldb output_03.read-db.meryldb value |
| Test-16 |
operation_type|groups_operations: intersect operation_type|input_meryldb_02: output_02.read-db.meryldb operation_type|input_meryldb_03: output_03.read-db.meryldb operation_type|command_type: groups-kmers |
name: value |
output_02.read-db.meryldb output_03.read-db.meryldb value |
| Test-17 |
operation_type|groups_operations: intersect-min operation_type|input_meryldb_02: output_02.read-db.meryldb operation_type|input_meryldb_03: output_03.read-db.meryldb operation_type|command_type: groups-kmers |
name: value |
output_02.read-db.meryldb output_03.read-db.meryldb value |
| Test-18 |
operation_type|groups_operations: intersect-max operation_type|input_meryldb_02: output_02.read-db.meryldb operation_type|input_meryldb_03: output_03.read-db.meryldb operation_type|command_type: groups-kmers |
name: value |
output_02.read-db.meryldb output_03.read-db.meryldb value |
| Test-19 |
operation_type|groups_operations: intersect-sum operation_type|input_meryldb_02: output_02.read-db.meryldb operation_type|input_meryldb_03: output_03.read-db.meryldb operation_type|command_type: groups-kmers |
name: value |
output_02.read-db.meryldb output_03.read-db.meryldb value |
| Test-20 |
operation_type|groups_operations: subtract operation_type|input_meryldb_02: output_02.read-db.meryldb operation_type|input_meryldb_03: output_03.read-db.meryldb operation_type|command_type: groups-kmers |
name: value |
output_02.read-db.meryldb output_03.read-db.meryldb value |
| Test-21 |
operation_type|groups_operations: difference operation_type|input_meryldb_02: output_02.read-db.meryldb operation_type|input_meryldb_03: output_03.read-db.meryldb operation_type|command_type: groups-kmers |
name: value |
output_02.read-db.meryldb output_03.read-db.meryldb value |
| Test-22 |
operation_type|groups_operations: symmetric-difference operation_type|input_meryldb_02: output_02.read-db.meryldb operation_type|input_meryldb_03: output_03.read-db.meryldb operation_type|command_type: groups-kmers |
name: value |
output_02.read-db.meryldb output_03.read-db.meryldb value |
| Test-23 |
operation_type|child_reads: child.fasta operation_type|paternal_reads: paternal.fasta operation_type|maternal_reads: maternal.fasta operation_type|options_kmer_size|input_kmer_size: 7 operation_type|options_kmer_size|kmer_size: provide operation_type|command_type: trio-mode |
name: value name: value name: value name: value name: value name: value |
child.fasta paternal.fasta maternal.fasta value |
| Test-24 |
operation_type|input_meryldb_02: read-db.meryldb operation_type|command_type: histogram-kmers |
name: value |
read-db.meryldb value |