| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/3.1+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.8+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.1.0 |
| TextExporter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.8 | package |
| openms-thirdparty | 2.8 | package |
| omssa | 2.1.9 | package |
| blast | 2.13.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: TextExporter_1_input.featureXML out_type: txt replacement: _ quoting: none no_ids: False feature|minimal: False feature|add_metavalues: -1 id|proteins_only: False id|peptides_only: False id|protein_groups: False id|first_dim_rt: False id|add_metavalues: -1 id|add_hit_metavalues: -1 id|add_protein_hit_metavalues: -1 consensus|sorting_method: none consensus|sort_by_maps: False consensus|sort_by_size: False adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TextExporter_1_input.featureXML value |
| Test-2 |
in: TextExporter_2_input.consensusXML out_type: tsv replacement: _ quoting: none no_ids: True feature|minimal: False feature|add_metavalues: -1 id|proteins_only: False id|peptides_only: False id|protein_groups: False id|first_dim_rt: False id|add_metavalues: -1 id|add_hit_metavalues: -1 id|add_protein_hit_metavalues: -1 consensus|sorting_method: RT_then_MZ consensus|sort_by_maps: True consensus|sort_by_size: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'centroids_FLAG', 'elements_FLAG', 'features_FLAG'] |
name: value name: value name: value name: value name: value |
TextExporter_2_input.consensusXML value |
| Test-3 |
in: TextExporter_3_input.idXML out_type: txt replacement: _ quoting: none no_ids: False feature|minimal: False feature|add_metavalues: -1 id|proteins_only: False id|peptides_only: False id|protein_groups: False id|first_dim_rt: False id|add_metavalues: -1 id|add_hit_metavalues: -1 id|add_protein_hit_metavalues: -1 consensus|sorting_method: none consensus|sort_by_maps: False consensus|sort_by_size: False adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TextExporter_3_input.idXML value |
| Test-4 |
in: TextExporter_3_input.idXML out_type: txt replacement: _ quoting: none no_ids: False feature|minimal: False feature|add_metavalues: -1 id|proteins_only: True id|peptides_only: False id|protein_groups: False id|first_dim_rt: False id|add_metavalues: -1 id|add_hit_metavalues: -1 id|add_protein_hit_metavalues: -1 consensus|sorting_method: none consensus|sort_by_maps: False consensus|sort_by_size: False adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TextExporter_3_input.idXML value |
| Test-5 |
in: TextExporter_5_input.idXML out_type: txt replacement: _ quoting: none no_ids: False feature|minimal: False feature|add_metavalues: -1 id|proteins_only: False id|peptides_only: True id|protein_groups: False id|first_dim_rt: True id|add_metavalues: -1 id|add_hit_metavalues: -1 id|add_protein_hit_metavalues: -1 consensus|sorting_method: none consensus|sort_by_maps: False consensus|sort_by_size: False adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TextExporter_5_input.idXML value |
| Test-6 |
in: TextExporter_6_input.featureXML out_type: txt replacement: _ quoting: none no_ids: True feature|minimal: False feature|add_metavalues: -1 id|proteins_only: False id|peptides_only: False id|protein_groups: False id|first_dim_rt: False id|add_metavalues: -1 id|add_hit_metavalues: -1 id|add_protein_hit_metavalues: -1 consensus|sorting_method: none consensus|sort_by_maps: False consensus|sort_by_size: False adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TextExporter_6_input.featureXML value |
| Test-7 |
in: TextExporter_7_input.consensusXML out_type: tsv replacement: _ quoting: none no_ids: False feature|minimal: False feature|add_metavalues: -1 id|proteins_only: False id|peptides_only: False id|protein_groups: False id|first_dim_rt: False id|add_metavalues: -1 id|add_hit_metavalues: -1 id|add_protein_hit_metavalues: -1 consensus|sorting_method: RT_then_MZ consensus|sort_by_maps: True consensus|sort_by_size: True adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TextExporter_7_input.consensusXML value |
| Test-8 |
in: TextExporter_1_input.featureXML out_type: txt replacement: _ quoting: none no_ids: True feature|minimal: False feature|add_metavalues: -1 id|proteins_only: False id|peptides_only: False id|protein_groups: False id|first_dim_rt: False id|add_metavalues: -1 id|add_hit_metavalues: -1 id|add_protein_hit_metavalues: -1 consensus|sorting_method: none consensus|sort_by_maps: False consensus|sort_by_size: False adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TextExporter_1_input.featureXML value |
| Test-9 |
in: TextExporter_9_input.idXML out_type: txt replacement: _ quoting: none no_ids: False feature|minimal: False feature|add_metavalues: -1 id|proteins_only: False id|peptides_only: False id|protein_groups: False id|first_dim_rt: False id|add_metavalues: 0 id|add_hit_metavalues: 0 id|add_protein_hit_metavalues: -1 consensus|sorting_method: none consensus|sort_by_maps: False consensus|sort_by_size: False adv_opts|force: False adv_opts|test: true OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
TextExporter_9_input.idXML value |