Repository revision
13:1b03536aa3c9

Repository 'openms_textexporter'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter

TextExporter tool metadata
Miscellaneous
TextExporter
Exports various XML formats to a text file.
TextExporter
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.8+galaxy0
2.8+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.8+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.6+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.5+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.2.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_textexporter/TextExporter/2.1.0
TextExporter
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.8 package
openms-thirdparty 2.8 package
omssa 2.1.9 package
blast 2.13.0 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: TextExporter_1_input.featureXML
out_type: txt
replacement: _
quoting: none
no_ids: False
feature|minimal: False
feature|add_metavalues: -1
id|proteins_only: False
id|peptides_only: False
id|protein_groups: False
id|first_dim_rt: False
id|add_metavalues: -1
id|add_hit_metavalues: -1
id|add_protein_hit_metavalues: -1
consensus|sorting_method: none
consensus|sort_by_maps: False
consensus|sort_by_size: False
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
TextExporter_1_input.featureXML
value
Test-2 in: TextExporter_2_input.consensusXML
out_type: tsv
replacement: _
quoting: none
no_ids: True
feature|minimal: False
feature|add_metavalues: -1
id|proteins_only: False
id|peptides_only: False
id|protein_groups: False
id|first_dim_rt: False
id|add_metavalues: -1
id|add_hit_metavalues: -1
id|add_protein_hit_metavalues: -1
consensus|sorting_method: RT_then_MZ
consensus|sort_by_maps: True
consensus|sort_by_size: True
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ['ctd_out_FLAG', 'centroids_FLAG', 'elements_FLAG', 'features_FLAG']
name: value
name: value
name: value
name: value
name: value
TextExporter_2_input.consensusXML
value
Test-3 in: TextExporter_3_input.idXML
out_type: txt
replacement: _
quoting: none
no_ids: False
feature|minimal: False
feature|add_metavalues: -1
id|proteins_only: False
id|peptides_only: False
id|protein_groups: False
id|first_dim_rt: False
id|add_metavalues: -1
id|add_hit_metavalues: -1
id|add_protein_hit_metavalues: -1
consensus|sorting_method: none
consensus|sort_by_maps: False
consensus|sort_by_size: False
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
TextExporter_3_input.idXML
value
Test-4 in: TextExporter_3_input.idXML
out_type: txt
replacement: _
quoting: none
no_ids: False
feature|minimal: False
feature|add_metavalues: -1
id|proteins_only: True
id|peptides_only: False
id|protein_groups: False
id|first_dim_rt: False
id|add_metavalues: -1
id|add_hit_metavalues: -1
id|add_protein_hit_metavalues: -1
consensus|sorting_method: none
consensus|sort_by_maps: False
consensus|sort_by_size: False
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
TextExporter_3_input.idXML
value
Test-5 in: TextExporter_5_input.idXML
out_type: txt
replacement: _
quoting: none
no_ids: False
feature|minimal: False
feature|add_metavalues: -1
id|proteins_only: False
id|peptides_only: True
id|protein_groups: False
id|first_dim_rt: True
id|add_metavalues: -1
id|add_hit_metavalues: -1
id|add_protein_hit_metavalues: -1
consensus|sorting_method: none
consensus|sort_by_maps: False
consensus|sort_by_size: False
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
TextExporter_5_input.idXML
value
Test-6 in: TextExporter_6_input.featureXML
out_type: txt
replacement: _
quoting: none
no_ids: True
feature|minimal: False
feature|add_metavalues: -1
id|proteins_only: False
id|peptides_only: False
id|protein_groups: False
id|first_dim_rt: False
id|add_metavalues: -1
id|add_hit_metavalues: -1
id|add_protein_hit_metavalues: -1
consensus|sorting_method: none
consensus|sort_by_maps: False
consensus|sort_by_size: False
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
TextExporter_6_input.featureXML
value
Test-7 in: TextExporter_7_input.consensusXML
out_type: tsv
replacement: _
quoting: none
no_ids: False
feature|minimal: False
feature|add_metavalues: -1
id|proteins_only: False
id|peptides_only: False
id|protein_groups: False
id|first_dim_rt: False
id|add_metavalues: -1
id|add_hit_metavalues: -1
id|add_protein_hit_metavalues: -1
consensus|sorting_method: RT_then_MZ
consensus|sort_by_maps: True
consensus|sort_by_size: True
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
TextExporter_7_input.consensusXML
value
Test-8 in: TextExporter_1_input.featureXML
out_type: txt
replacement: _
quoting: none
no_ids: True
feature|minimal: False
feature|add_metavalues: -1
id|proteins_only: False
id|peptides_only: False
id|protein_groups: False
id|first_dim_rt: False
id|add_metavalues: -1
id|add_hit_metavalues: -1
id|add_protein_hit_metavalues: -1
consensus|sorting_method: none
consensus|sort_by_maps: False
consensus|sort_by_size: False
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
TextExporter_1_input.featureXML
value
Test-9 in: TextExporter_9_input.idXML
out_type: txt
replacement: _
quoting: none
no_ids: False
feature|minimal: False
feature|add_metavalues: -1
id|proteins_only: False
id|peptides_only: False
id|protein_groups: False
id|first_dim_rt: False
id|add_metavalues: 0
id|add_hit_metavalues: 0
id|add_protein_hit_metavalues: -1
consensus|sorting_method: none
consensus|sort_by_maps: False
consensus|sort_by_size: False
adv_opts|force: False
adv_opts|test: true
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
name: value
TextExporter_9_input.idXML
value