| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmsp/pampa_glmsp/0.0.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/ecology/pampa_glmsp/pampa_glmsp/0.0.1 |
| pampa_glmsp |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| r-gap | 1.2.2 | package |
| r-glmmtmb | 1.0.1 | package |
| r-multcomp | 1.4_13 | package |
| r-dharma | 0.3.3.0 | package |
| Additional information about this tool |
Rscript
'$__tool_directory__/FunctExeCalcGLMSpGalaxy.r'
'$input_metric'
'$input_unitobs'
'$varint'
'$varrep'
'$varrand'
'species.code'
#if $settings.advanced=='advanced'
$settings.distrib
$settings.rdata
#else
'None'
'false'
#end if
'unitSp'
'$__tool_directory__/FunctPAMPAGalaxy.r'
'$output_summary'
'$output_recap'
#if $settings.advanced=='advanced'
#if $settings.rdata=='true'
'$output_GLM'
#end if
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_metric: Presence_absence_table_sansszcl_cropped.tabular input_unitobs: Unitobs.tabular varint: 4 varrep: ['year', 'site', 'habitat'] varrand: site settings|distrib: None settings|rdata: True settings|advanced: advanced |
name: value name: value name: value |
Presence_absence_table_sansszcl_cropped.tabular Unitobs.tabular value |