Repository revision
7:8c6433857aa8

Repository 'khmer_filter_abundance'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/khmer_filter_abundance

khmer: Filter reads tool metadata
Miscellaneous
by minimal k-mer abundance
khmer_filter_abundance
toolshed.g2.bx.psu.edu/repos/iuc/khmer_filter_abundance/khmer_filter_abundance/3.0.0a3+galaxy1
3.0.0a3+galaxy1
filter-abund.py --version 2>&1 | tail -n 1 | cut -d ' ' -f 2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/khmer_filter_abundance/khmer_filter_abundance/3.0.0a3+galaxy2
toolshed.g2.bx.psu.edu/repos/iuc/khmer_filter_abundance/khmer_filter_abundance/3.0.0a3+galaxy1 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/khmer_filter_abundance/khmer_filter_abundance/3.0.0a1.0
toolshed.g2.bx.psu.edu/repos/iuc/khmer_filter_abundance/khmer_filter_abundance/2.0.0
khmer_filter_abundance
Requirements (dependencies defined in the <requirements> tag set)
name version type
khmer 3.0.0a3 package
Functional tests
name inputs outputs required files
Test-1 inputs: test-abund-read-2.fa
input_countgraph_filename: test-abund-read-2.oxlicg
test-abund-read-2.fa
test-abund-read-2.oxlicg
Test-2 inputs: test-abund-read-2.fa
input_countgraph_filename: test-abund-read-2.oxlicg
cutoff: 1
test-abund-read-2.fa
test-abund-read-2.oxlicg