Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_pca/mothur_pca/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_pca/mothur_pca/1.36.1.0 |
mothur_pca |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$otu' otu.dat && echo 'pca( #if $otu.is_of_type("mothur.relabund"): relabund=otu.dat, #elif $otu.is_of_type("mothur.shared"): shared=otu.dat, #end if #if $label: label=${ str($label).replace(",","-") }, #end if #if $groups: groups=${ str($groups).replace(",","-") }, #end if metric=$metric )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
otu: amazon.an.shared label: ['0.22', '0.55'] groups: ['forest', 'pasture'] savelog: True |
name: value |
amazon.an.shared value |