| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/pjbriggs/rnachipintegrator/rnachipintegrator_wrapper/1.0.3.0 |
| toolshed.g2.bx.psu.edu/repos/pjbriggs/rnachipintegrator/rnachipintegrator_wrapper/1.0.2.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/pjbriggs/rnachipintegrator/rnachipintegrator_wrapper/1.0.0.0 |
| toolshed.g2.bx.psu.edu/repos/pjbriggs/rnachipintegrator/rnachipintegrator_wrapper/0.4.4-0 |
| rnachipintegrator_wrapper |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python_xlsxwriter | 0.8.4 | package |
| rnachipintegrator | 1.0.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
promoter_end: 2500 cutoff: 130000 peaks_in: summits.txt features_in: features.txt promoter_start: -10000 |
xlsx_out: summits.xlsx peaks_per_feature_out: summits_per_feature.out features_per_peak_out: features_per_summit.out |
features.txt summits.txt summits.xlsx summits_per_feature.out features_per_summit.out |
| Test-2 |
promoter_end: 2500 cutoff: 130000 peaks_in: peaks.txt features_in: features.txt promoter_start: -10000 |
xlsx_out: peaks1.xlsx peaks_per_feature_out: peaks_per_feature1.out features_per_peak_out: features_per_peak1.out |
features.txt peaks.txt peaks1.xlsx peaks_per_feature1.out features_per_peak1.out |
| Test-3 |
cutoff: 130000 peaks_in: peaks.txt features_in: features.txt output|compact_format: False |
xlsx_out: peaks2.xlsx peaks_per_feature_out: peaks_per_feature2.out features_per_peak_out: features_per_peak2.out |
features.txt peaks.txt peaks2.xlsx peaks_per_feature2.out features_per_peak2.out |
| Test-4 |
cutoff: 130000 peaks_in: peaks.txt diff_expressed_only: True features_in: features.txt |
xlsx_out: peaks3.xlsx peaks_per_feature_out: peaks_per_feature3.out features_per_peak_out: features_per_peak3.out |
features.txt peaks.txt peaks3.xlsx peaks_per_feature3.out features_per_peak3.out |
| Test-5 |
cutoff: 130000 features_in: features.txt output|summary: True output|pad_output: True output|compact_format: False peaks_in: peaks.txt |
xlsx_out: peaks4.xlsx peaks_per_feature_out: peaks_per_feature4.out features_per_peak_out: features_per_peak4.out peaks_per_feature_summary: peaks_per_feature4.summary features_per_peak_summary: features_per_peak4.summary |
features.txt peaks.txt peaks4.xlsx peaks_per_feature4.out features_per_peak4.out peaks_per_feature4.summary features_per_peak4.summary |
| Test-6 |
cutoff: features_in: features.txt output|summary: True output|pad_output: True output|compact_format: False peaks_in: peaks.txt |
xlsx_out: peaks6.xlsx peaks_per_feature_out: peaks_per_feature6.out features_per_peak_out: features_per_peak6.out peaks_per_feature_summary: peaks_per_feature6.summary features_per_peak_summary: features_per_peak6.summary |
features.txt peaks.txt peaks6.xlsx peaks_per_feature6.out features_per_peak6.out peaks_per_feature6.summary features_per_peak6.summary |