Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/qiime_core_diversity/qiime_core_diversity/1.9.1.0 (this tool) |
qiime_core_diversity |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
qiime | 1.9.1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
suppress_alpha_diversity: True suppress_taxa_summary: False input_biom_fp: core_diversity_analyses/otu_table.biom phylogenetic|tree_fp: core_diversity_analyses/rep_set.tre parallel: True phylogenetic|nonphylogenetic_diversity: sampling_depth: 22 suppress_group_significance: False suppress_beta_diversity: True mapping_fp: core_diversity_analyses/map.txt |
attributes: name |
core_diversity_analyses/otu_table.biom core_diversity_analyses/map.txt core_diversity_analyses/rep_set.tre name |
Test-2 |
suppress_alpha_diversity: True input_biom_fp: core_diversity_analyses/otu_table.biom suppress_taxa_summary: True parallel: True phylogenetic|nonphylogenetic_diversity: --nonphylogenetic_diversity sampling_depth: 22 suppress_group_significance: True suppress_beta_diversity: False mapping_fp: core_diversity_analyses/map.txt |
attributes: name |
core_diversity_analyses/otu_table.biom core_diversity_analyses/map.txt name |
Test-3 |
suppress_alpha_diversity: False suppress_taxa_summary: True input_biom_fp: core_diversity_analyses/otu_table.biom parameter_fp: core_diversity_analyses/alpha_diversity_params.txt parallel: True phylogenetic|nonphylogenetic_diversity: --nonphylogenetic_diversity sampling_depth: 22 suppress_group_significance: True suppress_beta_diversity: True mapping_fp: core_diversity_analyses/map.txt |
attributes: name |
core_diversity_analyses/otu_table.biom core_diversity_analyses/map.txt core_diversity_analyses/alpha_diversity_params.txt name |
Test-4 |
suppress_alpha_diversity: True input_biom_fp: core_diversity_analyses/otu_table.biom suppress_taxa_summary: True parallel: True phylogenetic|nonphylogenetic_diversity: --nonphylogenetic_diversity sampling_depth: 22 suppress_group_significance: True suppress_beta_diversity: True mapping_fp: core_diversity_analyses/map.txt |
attributes: name |
core_diversity_analyses/otu_table.biom core_diversity_analyses/map.txt name |