Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_shared/mothur_filter_shared/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_shared/mothur_filter_shared/1.36.1.0 |
mothur_filter_shared |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$otu' otu.dat && echo 'filter.shared( shared=otu.dat, #if $label: label=${ str($label).replace(",","-") }, #end if #if $label: groups=${ str($groups).replace(",","-") }, #end if minabund=$minabund, minpercent=$minpercent, rarepercent=$rarepercent, keepties=$keepties, minnumsamples=$minnumsamples, minpercentsamples=$minpercentsamples, mintotal=$mintotal, makerare=$makerare )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
otu: esophagus.fn.shared savelog: True |
name: value |
esophagus.fn.shared value |
Test-2 |
otu: amazon.an.shared label: ['0.05', '0.29', '0.33'] groups: ['forest', 'pasture'] minabund: 1 savelog: True |
name: value |
amazon.an.shared value |