| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/kraken_filter/kraken-filter/1.3.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/kraken_filter/kraken-filter/1.2.3 |
| toolshed.g2.bx.psu.edu/repos/devteam/kraken_filter/kraken-filter/1.2.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/kraken_filter/kraken-filter/1.2.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/kraken_filter/kraken-filter/1.1.0 |
| kraken-filter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| kraken | 1.1.1 | package |
| Additional information about this tool |
if [ -d '${kraken_database.fields.path}/${kraken_database.fields.name}' ]; then export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}/${kraken_database.fields.name}'; else export KRAKEN_DEFAULT_DB='${kraken_database.fields.path}'; fi &&
kraken-filter
--db "\$KRAKEN_DEFAULT_DB"
--threshold $threshold
'${input}'
> '$filtered_output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: kraken-filter/kraken_filter_test1.tab threshold: 0 kraken_database: new_style_test_entry |
name: value |
kraken-filter/kraken_filter_test1.tab value |