| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_qual/mothur_summary_qual/1.39.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_qual/mothur_summary_qual/1.36.1.0 |
| mothur_summary_qual |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mothur | 1.39.5 | package |
| Additional information about this tool |
set -o pipefail; export TERM=vt100;
## create symlinks to input datasets
ln -s '$qfile' qfile.dat &&
ln -s '$name' name.dat &&
ln -s '$count' count.dat &&
echo 'summary.qual(
qfile=qfile.dat
#if $name:
,name=name.dat
#end if
#if $count:
,count=count.dat
#end if
)'
| sed 's/ //g' ## mothur trips over whitespace
| mothur
| tee mothur.out.log
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
qfile: Mock_S280_L001_R1_001_small.trim.contigs.qual savelog: True |
name: value name: value |
Mock_S280_L001_R1_001_small.trim.contigs.qual value |