| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/ivar_trim/ivar_trim/1.0.1+galaxy0 (this tool) |
| ivar_trim |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| ivar | 1.0.1 | package |
| samtools | 1.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_bed: covid19/ARTIC-V1.bed inc_primers: True input_bam: covid19/PC00101P_sub.sorted.bam |
attributes: name |
covid19/PC00101P_sub.sorted.bam covid19/ARTIC-V1.bed name |
| Test-2 |
input_bed: zika/db/zika_primers.bed input_bam: zika/Z52_a.sorted.bam |
attributes: name |
zika/Z52_a.sorted.bam zika/db/zika_primers.bed name |
| Test-3 |
input_bed: zika/db/zika_primers.bed input_bam: zika/Z52_b.sorted.bam |
attributes: name |
zika/Z52_b.sorted.bam zika/db/zika_primers.bed name |