Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.3.1+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.3.1+galaxy1 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/lofreq_call/lofreq_call/2.1.3.1+galaxy0 |
lofreq_call |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
lofreq | 2.1.3.1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
reads: lofreq-in1.bam reference_source|ref: pBR322.fa reference_source|ref_selector: history |
attributes: name |
lofreq-in1.bam pBR322.fa name |
Test-2 |
reads: lofreq-in1.bam call_control|set_call_options: yes reference_source|ref: pBR322.fa reference_source|ref_selector: history |
attributes: name |
lofreq-in1.bam pBR322.fa name |
Test-3 |
call_control|source_qual|use_src_qual|ign_vcf: call-out1.vcf reference_source|ref: pBR322.fa call_control|source_qual|use_src_qual|src_qual: --src-qual reference_source|ref_selector: history call_control|set_call_options: yes call_control|source_qual|use_src_qual|def_nm_q: 40 reads: lofreq-in1.bam |
attributes: name |
lofreq-in1.bam pBR322.fa call-out1.vcf name |
Test-4 |
reads: lofreq-in1.bam filter_control|filter_type: set_all_off reference_source|ref: pBR322.fa reference_source|ref_selector: history |
attributes: name |
lofreq-in1.bam pBR322.fa name |