Galaxy |

bcftools isec tool metadata

Miscellaneous

Name: bcftools isec

Description: Create intersections, unions and complements of VCF files

Id: bcftools_isec

Guid: toolshed.g2.bx.psu.edu/repos/iuc/bcftools_isec/bcftools_isec/1.15.1+galaxy0

Version: 1.15.1+galaxy0

Version command string: bcftools 2>&1 | grep 'Version:'

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/bcftools_isec/bcftools_isec/1.15.1+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/bcftools_isec/bcftools_isec/1.15.1+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/bcftools_isec/bcftools_isec/1.10+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/bcftools_isec/bcftools_isec/1.10

toolshed.g2.bx.psu.edu/repos/iuc/bcftools_isec/bcftools_isec/1.9+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/bcftools_isec/bcftools_isec/1.9

toolshed.g2.bx.psu.edu/repos/iuc/bcftools_isec/bcftools_isec/1.4.0

toolshed.g2.bx.psu.edu/repos/iuc/bcftools_isec/bcftools_isec/1.3.1

toolshed.g2.bx.psu.edu/repos/iuc/bcftools_isec/bcftools_isec/1.3.0

bcftools_isec

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

bcftools

1.15.1

package

htslib

1.15.1

package

Functional tests

name

inputs

outputs

required files

Test-1

input_files: ['isec.b.vcf', 'isec.a.vcf']
sec_default|nfiles: =2
output_type: v

name: value

isec.b.vcf
isec.a.vcf
value

Test-2

input_files: ['isec.b.vcf', 'isec.a.vcf']
sec_restrict|regions_overlap: 1
sec_default|nfiles: =2
output_type: v

name: value

isec.b.vcf
isec.a.vcf
value