Revision: 0:99308601eaa6

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/perssond/coreograph

Miscellaneous

Name: UNetCoreograph

Description: Coreograph uses UNet, a deep learning model, to identify complete/incomplete tissue cores on a tissue microarray. It has been trained on 9 TMA slides of different sizes and tissue types.

Id: unet_coreograph

Guid: toolshed.g2.bx.psu.edu/repos/perssond/coreograph/unet_coreograph/2.2.0.3

Version: 2.2.0.3

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/perssond/coreograph/unet_coreograph/2.2.8.3

toolshed.g2.bx.psu.edu/repos/perssond/coreograph/unet_coreograph/2.2.0.3 (this tool)

unet_coreograph

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name	version	type
python	3.6	package
tensorflow-estimator	1.15.1	package
tensorflow	1.15	package
cython	not provided	package
scikit-image	0.14.2	package
matplotlib	not provided	package
tifffile	2020.2.16	package
scipy	1.1.0	package
opencv	not provided	package
pytiff	0.8.1	package

Functional tests

No functional tests defined