Repository revision
1:812de0e282bd

Repository 'blast_reporting'
hg clone https://toolshed.g2.bx.psu.edu/repos/damion/blast_reporting

BLAST Reporting tool metadata
Miscellaneous
BLAST search results reporting tool
blast_reporting
toolshed.g2.bx.psu.edu/repos/damion/blast_reporting/blast_reporting/1.0.5
1.0.5
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/damion/blast_reporting/blast_reporting/1.0.5 (this tool)
blast_reporting
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Functional tests
name inputs outputs required files
Test-1 out_format: std
drop_redundant_hits: False
column_labels:
blastxml_file: blastx_sample.xml
tabular_file: blastx_sample_converted.tabular
blastx_sample.xml
blastx_sample_converted.tabular
Test-2 out_format: std
drop_redundant_hits: True
column_labels:
blastxml_file: blast_reporting_1.blastxml
tabular_file: blast_reporting_1a.tabular
blast_reporting_1.blastxml
blast_reporting_1a.tabular
Test-3 out_format: std
blastxml_file: blast_reporting_1.blastxml
column_labels:
filter_num_0|filter_column: pident
filter_num_0|constraint_0|filter_comparison: gte
filter_num_0|constraint_0|filter_value: 97
drop_redundant_hits: True
tabular_file: blast_reporting_1b.tabular
blast_reporting_1.blastxml
blast_reporting_1b.tabular
Test-4 out_format: ext+
fields_0|sort: asc
blastxml_file: blast_reporting_1.blastxml
column_labels: label
filter_num_0|filter_column: pident
filter_num_0|constraint_0|filter_comparison: gte
filter_num_0|constraint_0|filter_value: 97
fields_0|group: column
fields_0|field: pident
drop_redundant_hits: True
tabular_file: blast_reporting_1c.tabular
selection_file: blast_reporting_1c1.tabular
blast_reporting_1.blastxml
blast_reporting_1c.tabular
blast_reporting_1c1.tabular