Repository revision
1:36e26166034d

Repository 'schicexplorer_schiccluster'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccluster

scHicCluster tool metadata
Miscellaneous
scHicCluster
clusters single-cell Hi-C interaction matrices on the raw data
schicexplorer_schiccluster
toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccluster/schicexplorer_schiccluster/4.0
4.0
scHicCluster --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccluster/schicexplorer_schiccluster/4.1
toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccluster/schicexplorer_schiccluster/4.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccluster/schicexplorer_schiccluster/1.0
schicexplorer_schiccluster
Requirements (dependencies defined in the <requirements> tag set)
name version type
schicexplorer 4 package
Functional tests
name inputs outputs required files
Test-1 clusterMethod_selector: kmeans
numberOfClusters: 7
dimensionReductionMethod_selector: none
matrix_scooler: test_matrix.scool
attributes: name
test_matrix.scool
name
Test-2 clusterMethod_selector: kmeans
chromosomes: chr1 chr2
numberOfClusters: 7
dimensionReductionMethod_selector: none
matrix_scooler: test_matrix.scool
attributes: name
test_matrix.scool
name
Test-3 clusterMethod_selector: spectral
numberOfClusters: 7
dimensionReductionMethod_selector: knn
matrix_scooler: test_matrix.scool
attributes: name
test_matrix.scool
name
Test-4 clusterMethod_selector: spectral
numberOfClusters: 7
dimensionReductionMethod_selector: pca
matrix_scooler: test_matrix.scool
attributes: name
test_matrix.scool
name