| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccluster/schicexplorer_schiccluster/4.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccluster/schicexplorer_schiccluster/1.0 (this tool) |
| schicexplorer_schiccluster |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| schicexplorer | 1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
clusterMethod_selector: kmeans matrix_mcooler: test_matrix.mcool numberOfClusters: 7 dimensionReductionMethod_selector: none |
attributes: name |
test_matrix.mcool name |
| Test-2 |
clusterMethod_selector: kmeans matrix_mcooler: test_matrix.mcool chromosomes: chr1 chr2 numberOfClusters: 7 dimensionReductionMethod_selector: none |
attributes: name |
test_matrix.mcool name |
| Test-3 |
clusterMethod_selector: spectral matrix_mcooler: test_matrix.mcool numberOfClusters: 7 dimensionReductionMethod_selector: knn |
attributes: name |
test_matrix.mcool name |
| Test-4 |
clusterMethod_selector: spectral matrix_mcooler: test_matrix.mcool numberOfClusters: 7 dimensionReductionMethod_selector: pca |
attributes: name |
test_matrix.mcool name |