Repository revision
10:09bf9e496c64

Repository 'mothur_classify_seqs'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs

Classify.seqs tool metadata
Miscellaneous
Assign sequences to taxonomy
mothur_classify_seqs
toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.39.5.0
1.39.5.0
mothur "#help()" | sed '7q;d' | cut -d" " -f2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.39.5.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.36.1.0
mothur_classify_seqs
Requirements (dependencies defined in the <requirements> tag set)
name version type
mothur 1.39.5 package
Functional tests
name inputs outputs required files
Test-1 fasta: amazon.fasta
alignment|template: abrecovery.fasta
alignment|source: hist
tax|taxonomy: abrecovery.pds.wang.taxonomy
tax|source2: hist
savelog: True
name: value
name: value
name: value
name: value
amazon.fasta
abrecovery.fasta
abrecovery.pds.wang.taxonomy
value
Test-2 fasta: amazon.fasta
alignment|template: abrecovery.fasta
alignment|source: hist
tax|taxonomy: abrecovery.pds.wang.taxonomy
tax|source2: hist
classify|method: knn
savelog: True
name: value
name: value
name: value
amazon.fasta
abrecovery.fasta
abrecovery.pds.wang.taxonomy
value
Test-3 fasta: abrecovery.fasta
alignment|template: abrecovery.fasta
alignment|source: hist
tax|taxonomy: abrecovery.pds.wang.taxonomy
tax|source2: hist
classify|search|algorithm: blast
classify|method: knn
savelog: True
name: value
name: value
name: value
abrecovery.fasta
abrecovery.pds.wang.taxonomy
value