| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/nml/srst2/srst2/0.3.7 (this tool) |
| toolshed.g2.bx.psu.edu/repos/nml/srst2/srst2/0.3.6 |
| srst2 |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| srst2 | 0.1.4.6 | package |
| vfdb | 08-07-2014 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
mlst_or_genedb|job_type: mlst_only single_or_paired|type: collection mlst_or_genedb|mlst_defs: ecoli.txt single_or_paired|fastq_collection: paired collection mlst_or_genedb|mlst_delim: - mlst_or_genedb|mlst_max_mismatch: 10 mlst_or_genedb|mlst_db: Escherichia_coli#1.fasta |
bam_results: ERR028678_sampled.bam scores: ERR028678_sampled_scores.tabular alleles: ERR028678_sampled_alleles.fasta txt_results: ERR028678_sampled_text_results.tabular |
ERR028678_sampled_1.fastq ERR028678_sampled_2.fastq ecoli.txt Escherichia_coli#1.fasta ERR028678_sampled.bam ERR028678_sampled_scores.tabular ERR028678_sampled_alleles.fasta ERR028678_sampled_text_results.tabular |