ln -s '${input_obj_file}' input.h5 &&
PYTHONIOENCODING=utf-8 scanpy-cli plot embed

    --input-format '${input_format}' input.h5
  
#if $color_by
    --color '${color_by}'
#end if
${use_raw}
    --legend-loc '${legend_loc}'
    --legend-fontsize '${legend_fontsize}'
#if $basis
    --basis '${basis}'
#end if
#if $groups
    --groups $groups
#end if
#if $neighbors_key
    --neighbors-key '${neighbors_key}'
#end if    
#if $layer
    --layer '${layer}'
#end if
#if $point_size
    --size ${point_size}
#end if
#if $gene_symbols_field
    --gene-symbols ${gene_symbols_field}
    #end if
${edges} --edges-width ${edges_width}
#if $edges_color
    --edges-color ${edges_color}
#end if
#if $components
    --components ${components}
#end if
--projection $projection
$sort_order

#if $fig_title
    --title '${fig_title}'
#end if
    --fig-size '${fig_size}'
    --fig-dpi ${fig_dpi}
    --fig-fontsize ${fig_fontsize}
    ${fig_frame}
    ./output.png