| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/king/king/2.2.7+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/king/king/2.2.4+galaxy0 |
| king |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| king | 2.2.7 | package |
| r-kinship2 | 1.8.5 | package |
| r-igraph | 1.3.0 | package |
| r-e1071 | 1.7_9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
genotype: new.6000.bed close_rel_i|related: True opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-2 |
genotype: new.6000.bed close_rel_i|related: True inf_param|degree: 2 opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-3 |
genotype: new.6000.bed close_rel_i|related: True inf_param|degree: 2 opt_int|family: new.6000.fam opt_int|map: new.6000.bim opt_par|rplot: True use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-4 |
genotype: new.6000.bed close_rel_i|duplicate: True opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-5 |
genotype: new.6000.bed pair_rel_i|kinship: True opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-6 |
genotype: new.6000.bed close_rel_i|related: True str_par|projection: 100000 opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-7 |
genotype: new.6000.bed pair_rel_i|ibdseg: True opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-8 |
genotype: new.6000.bed pair_rel_i|ibdseg: True inf_param|degree: 3 opt_int|family: new.6000.fam opt_int|map: new.6000.bim opt_par|rplot: True use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-9 |
genotype: new.6000.bed pair_rel_i|ibs: True opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-10 |
genotype: new.6000.bed pair_rel_i|homog: True opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-11 |
genotype: new.6000.bed rel_app|unrelated: True opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-12 |
genotype: new.6000.bed inf_param|degree: 2 rel_app|unrelated: True opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-13 |
genotype: new.6000.bed rel_app|build: True opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-14 |
genotype: new.6000.bed inf_param|degree: 2 rel_app|build: True opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-15 |
genotype: new.6000.bed rel_app|cluster: True opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-16 |
genotype: new.6000.bed gen_rsk|risk: True gen_rsk|model: test.model gen_rsk|prevalence: 0.004 gen_rsk|noflip: True opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed test.model new.6000.fam new.6000.bim value |
| Test-17 |
genotype: new.6000.bed dis_ass|tdt: True opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-18 |
genotype: new.6000.bed qnt_trt|mtscore: False ass_mod|covariate: , ass_par|invnorm: True ass_par|maxP: 5e-8 opt_int|family: new.6000.fam opt_int|map: new.6000.bim use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |
| Test-19 |
genotype: new.6000.bed pop_str|pca: True str_par|projection: 1 opt_int|family: new.6000.fam opt_int|map: new.6000.bim opt_par|rplot: True opt_par|pngplot: True use_log: True |
name: value |
new.6000.bed new.6000.fam new.6000.bim value |