Repository revision
0:cf69ad260611

Repository 'srs_process_data'
hg clone https://toolshed.g2.bx.psu.edu/repos/ecology/srs_process_data

Compare diversity indicators tool metadata
Miscellaneous
with remote sensing data
srs_process_data
toolshed.g2.bx.psu.edu/repos/ecology/srs_process_data/srs_process_data/0.0.1
0.0.1
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/ecology/srs_process_data/srs_process_data/0.0.1 (this tool)
srs_process_data
Requirements (dependencies defined in the <requirements> tag set)
name version type
r-base 4.2.2 package
r-r.utils 2.12.2 package
r-sf 1.0_7 package
r-rgdal 1.5_32 package
r-rgeos 0.6_1 package
r-stars 0.5_5 package
r-stringr 1.5.0 package
r-biodivmapr 1.9.8 package
r-xfun 0.36 package
r-rastervis 0.51.4 package
r-ggplot2 3.4.0 package
r-mapview 2.11.0 package
r-gridextra 2.3 package
r-emstreer 3.0.0 package
r-filesstrings 3.2.3 package
Additional information about this tool
#import re 
        #if $method.type == 'envi_bil': 
          #set input_raster = $method.input_raster
          #set input_raster_identifier = re.sub('[^\s\w\-]', '_', str($input_raster.element_identifier)) 
          #set input_header = $method.input_header
          #set input_header_identifier = re.sub('[^\s\w\-]+[^.hdr]', '_', str($input_header.element_identifier)) 
          cp '${input_raster}' '${input_raster_identifier}' &&
          cp '${input_header}' '${input_header_identifier}' &&
        #end if
        Rscript
            '$__tool_directory__/comparison_div.r'
             #if $method.type == 'envi_bil':
              '$input_raster_identifier' 
              '$input_header_identifier'
              ''
            #else:
              ''
              ''
              '$method.input'
            #end if
            '$input_plot'
            '$choice'
            '$__tool_directory__/functions.r'
            '$typepca'
            '$output_div'
            '$output_beta'
            '$plots'
        
    
None
False
Functional tests
name inputs outputs required files
Test-1 method|input_raster: S2A_Subset
method|input_header: S2A_Subset.hdr
method|type: envi_bil
input_plot: S2A_T33NUD_Plots.zip
choice: Y
name: value
name: value
S2A_Subset
S2A_Subset.hdr
S2A_T33NUD_Plots.zip
value