Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.47+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.36+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.31+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.31+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.31+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.30+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.29+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.26+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.25+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.24+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.23+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.21+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.17+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.15+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.14+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.12+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.11+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.9+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.8+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.7+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.5+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.4+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.3+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.2+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.2+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.5.0+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/hyphy_busted/hyphy_busted/2.3.14+galaxy0 |
hyphy_busted |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
hyphy | 2.5.47 | package |
Additional information about this tool |
#if $input_nhx is not None: ln -s '$input_nhx' input.nhx && #end if ln -s '$input_file' input.$input_file.extension && #set $input_file = 'input.%s' % $input_file.extension hyphy busted --alignment ./$input_file #if $input_nhx: --tree input.nhx #end if --code $gencodeid #if $branch_cond.branch_sel == 'specify': --branches '$branch_cond.branch_label' #else: --branches $branch_cond.branch_sel #end if --output '$busted_output' #if $advanced.srv_options == 'specify': --grid-size $advanced.grid_size --starting-points $advanced.starting_points --syn-rates $advanced.syn_rates --rates $advanced.rates --srv $advanced.srv #if $advanced.save_alternative_model: --save-fit alternative_model.nhx #end if #end if ; EC=\$? ; [[ -f errors.* ]] && cat errors.* >&2 ; exit \$EC
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_file: absrel-in1.fa input_nhx: absrel-in1.nhx |
name: value |
absrel-in1.fa absrel-in1.nhx value |
Test-2 |
input_file: busted-in2.nex branch_cond|branch_label: B_US_90_WEAU160_BRANCH branch_cond|branch_sel: specify advanced|save_alternative_model: True advanced|srv_options: specify |
name: value name: value |
busted-in2.nex value |