| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/strelka_germline/strelka_germline/2.9.10+galaxy0 (this tool) |
| strelka_germline |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| strelka | 2.9.10 | package |
| samtools | 1.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
bam: ['sample1.bam', 'sample2.bam', 'sample3.bam'] ref_cond|ref: hg98.fa ref_cond|ref_sel: history expert_settings|s_e_e: --disableSequenceErrorEstimation oo|vcf_type: False oo|gvcf|emit_gvcfs: yes |
name: value |
sample1.bam sample2.bam sample3.bam hg98.fa value |
| Test-2 |
bam: ['sample1.cram', 'sample2.cram'] ref_cond|ref: hg98.fa ref_cond|ref_sel: history expert_settings|s_e_e: --disableSequenceErrorEstimation oo|vcf_type: True |
name: value |
sample1.cram sample2.cram hg98.fa value |
| Test-3 |
bam: ['sample1.cram', 'sample2.cram'] ref_cond|ref: hg98.fa ref_cond|ref_sel: history optimization: --rna pl|callContinuousVf: Chr1 oo|vcf_type: False oo|gvcf|emit_gvcfs: yes strelka|minMapq: 21 strelka|maxIndelSize: 51 |
name: value |
sample1.cram sample2.cram hg98.fa value |