| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/qiime_alpha_diversity/qiime_alpha_diversity/1.9.1.0 (this tool) |
| qiime_alpha_diversity |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| qiime | 1.9.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_path: alpha_diversity/otu_table.biom |
attributes: name |
alpha_diversity/otu_table.biom name |
| Test-2 |
metrics: ['ace', 'berger_parker_d', 'brillouin_d', 'chao1', 'chao1_ci', 'dominance', 'doubles', 'enspie', 'equitability', 'esty_ci', 'fisher_alpha', 'gini_index', 'goods_coverage', 'heip_e', 'kempton_taylor_q', 'margalef', 'mcintosh_d', 'mcintosh_e', 'menhinick', 'michaelis_menten_fit', 'observed_otus', 'observed_species', 'osd', 'simpson_reciprocal', 'robbins', 'shannon', 'simpson', 'simpson_e', 'singles', 'strong', 'PD_whole_tree'] tree_path: alpha_diversity/rep_set.tre input_path: alpha_diversity/otu_table.biom |
attributes: name |
alpha_diversity/otu_table.biom alpha_diversity/rep_set.tre name |