| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/1.3.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/0.14.1.2+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/0.14.1.2 |
| toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/0.14.1 |
| alevin |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| seqtk | 1.3 | package |
| salmon | 0.14.1 | package |
| samtools | 1.10 | package |
| vpolo | 0.2.0 | package |
| pandas | 0.25.1 | package |
| scipy | 1.3.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
pairstraight|strandedness: SR protocol: --chromium optional|freqThreshold: 5 pairstraight|orientation: I tgmap: minitxp.tsv pairstraight|file2: fastqs/moreminifastq2.fastq.gz optional|dumpFeatures: True refTranscriptSource|TranscriptSource: history pairstraight|readselect: paired optional|keepCBFraction: 1 refTranscriptSource|s_index|fasta: minitranscript.fa optional|dumpMtx: True pairstraight|file1: fastqs/moreminifastq1.fastq.gz |
attributes: name |
minitranscript.fa fastqs/moreminifastq1.fastq.gz fastqs/moreminifastq2.fastq.gz minitxp.tsv name |