| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/gemini/gemini_annotate/0.10.1.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/gemini/gemini_annotate/0.10.0.0 |
| gemini_annotate |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| gemini | 0.10.0 | package |
| grabix | 0.1.3 | package |
| tabix | 0.2.6 | package |
| samtools | 0.1.19 | package |
| bedtools | 2.19.1 | package |
| Additional information about this tool |
bgzip -c $annotate_source > tabixed.gz;
tabix -p bed tabixed.gz;
gemini annotate
-f tabixed.gz
-c $column_name
-a $a.a_selector
#if $a.a_selector == 'extract':
-t $a.column_type
-e $a.column_extracts
-o $a.operation
#end if
"${ infile }"
> "${ outfile }"
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |