Repository revision
4:ba3abde6775b

Repository 'gemini'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/gemini

GEMINI burden tool metadata
Miscellaneous
perform sample-wise gene-level burden calculations
gemini_burden
toolshed.g2.bx.psu.edu/repos/iuc/gemini/gemini_burden/0.10.1.0
0.10.1.0
gemini --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/gemini/gemini_burden/0.10.1.0 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/gemini/gemini_burden/0.10.0.0
gemini_burden
Requirements (dependencies defined in the <requirements> tag set)
name version type
gemini 0.10.0 package
grabix 0.1.3 package
tabix 0.2.6 package
samtools 0.1.19 package
bedtools 2.19.1 package
Additional information about this tool
gemini burden
          --cases $cases
          --controls $controls
            $save_tscores
            $nonsynonymous
            $calpha
            --permutations $permutations
            #if float( str($min_aaf) ) >= 0.0:
                --min-aaf $min_aaf
            #end if
            #if float( str($max_aaf) ) >= 0.0:
                --max-aaf $max_aaf
            #end if
            "${ infile }"
            > "${ outfile }"


    
None
False
Functional tests
name inputs outputs required files
Test-1