| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/gemini/gemini_interactions/0.10.1.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/gemini/gemini_interactions/0.10.0.0 |
| gemini_interactions |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| gemini | 0.10.0 | package |
| grabix | 0.1.3 | package |
| tabix | 0.2.6 | package |
| samtools | 0.1.19 | package |
| bedtools | 2.19.1 | package |
| Additional information about this tool |
gemini
--annotation-dir ${annotation_databases.fields.path}
#if $gene.gene_selector == 'lof':
## lof interactions is a separate program
lof_interactions
#else:
## use normal gemini interactions program
interactions
-g "${gene.gene}"
#end if
-r "${radius}"
$variant_mode
"${ infile }"
> "${ outfile }"
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |