| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/gemini/gemini_recessive_and_dominant/0.10.1.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/gemini/gemini_recessive_and_dominant/0.10.0.0 |
| gemini_recessive_and_dominant |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| gemini | 0.10.0 | package |
| grabix | 0.1.3 | package |
| tabix | 0.2.6 | package |
| samtools | 0.1.19 | package |
| bedtools | 2.19.1 | package |
| Additional information about this tool |
gemini
#if str($rec_or_dom) == 'recessive':
## start autosomal_recessive
autosomal_recessive
#else:
## start autosomal_dominant
autosomal_dominant
#end if
#if str($report.report_selector) != 'all':
--columns "${report.columns}"
#end if
#if str($filter.filter_selector) == 'yes' and $filter.filter:
#import pipes
--filter ${ pipes.quote( str( $filter.filter ) ) or "''" }
#end if
-d $d
#if int($min_kindreds) > 0:
--min-kindreds $min_kindreds
#end if
"${ infile }"
> "${ outfile }"
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |