| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/gemini/gemini_roh/0.10.1.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/gemini/gemini_roh/0.10.0.0 |
| gemini_roh |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| gemini | 0.10.0 | package |
| grabix | 0.1.3 | package |
| tabix | 0.2.6 | package |
| samtools | 0.1.19 | package |
| bedtools | 2.19.1 | package |
| Additional information about this tool |
gemini roh
--min-snps $min_snps
--min-total-depth $min_total_depth
--min-gt-depth $min_gt_depth
--min-size $min_size
--max-hets $max_hets
--max-unknowns $max_unknowns
#if $samples.strip() != '':
-s "${samples}"
#end if
"${ infile }"
> "${ outfile }"
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |