| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/cp_track_objects/cp_track_objects/3.1.9+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/cp_track_objects/cp_track_objects/3.1.9+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/cp_track_objects/cp_track_objects/3.1.9 |
| cp_track_objects |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python | 3.7 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_pipeline: common.cppipe object_to_track: Embryos con_tracking_method|max_distance: 50 con_tracking_method|con_filter_by_lifetime|filter_by_lifetime: No con_tracking_method|display_option: Color and Number con_tracking_method|con_save_coded_img|name_output_img: TrackedCells con_tracking_method|con_save_coded_img|save_coded_img: Yes con_tracking_method|tracking_method: Overlap |
name: value |
common.cppipe value |
| Test-2 |
input_pipeline: common.cppipe object_to_track: DNA con_tracking_method|max_distance: 40 con_tracking_method|con_filter_by_lifetime|con_use_min|min_lifetime: 2 con_tracking_method|con_filter_by_lifetime|con_use_min|use_min: Yes con_tracking_method|con_filter_by_lifetime|con_use_max|use_max: No con_tracking_method|con_filter_by_lifetime|filter_by_lifetime: Yes con_tracking_method|display_option: Color only con_tracking_method|con_save_coded_img|name_output_img: ColorCodedImage con_tracking_method|con_save_coded_img|save_coded_img: Yes con_tracking_method|tracking_method: Overlap |
name: value |
common.cppipe value |
| Test-3 |
input_pipeline: common.cppipe object_to_track: DNA con_tracking_method|max_distance: 50 con_tracking_method|con_filter_by_lifetime|con_use_min|use_min: No con_tracking_method|con_filter_by_lifetime|con_use_max|max_lifetime: 80 con_tracking_method|con_filter_by_lifetime|con_use_max|use_max: Yes con_tracking_method|con_filter_by_lifetime|filter_by_lifetime: Yes con_tracking_method|display_option: Color and Number con_tracking_method|con_save_coded_img|name_output_img: OutputImage con_tracking_method|con_save_coded_img|save_coded_img: Yes con_tracking_method|tracking_method: Distance |
name: value |
common.cppipe value |
| Test-4 |
input_pipeline: common.cppipe object_to_track: DNA con_tracking_method|con_measurement_category|measurement: MADIntensity con_tracking_method|con_measurement_category|img_measure: Image1 con_tracking_method|con_measurement_category|measurement_category: Intensity con_tracking_method|max_distance: 40 con_tracking_method|con_filter_by_lifetime|con_use_min|use_min: No con_tracking_method|con_filter_by_lifetime|con_use_max|max_lifetime: 120 con_tracking_method|con_filter_by_lifetime|con_use_max|use_max: Yes con_tracking_method|con_filter_by_lifetime|filter_by_lifetime: Yes con_tracking_method|display_option: Color only con_tracking_method|con_save_coded_img|save_coded_img: No con_tracking_method|tracking_method: Measurements |
name: value |
common.cppipe value |
| Test-5 |
input_pipeline: common.cppipe object_to_track: DNA con_tracking_method|movement_method: Velocity con_tracking_method|no_std_radius: 4.0 con_tracking_method|min_radius: 5.0 con_tracking_method|max_radius: 11.0 con_tracking_method|con_second_lap|gap_closing: 6 con_tracking_method|con_second_lap|split_alt: 6 con_tracking_method|con_second_lap|merge_alt: 6 con_tracking_method|con_second_lap|mitosis_alt: 6 con_tracking_method|con_second_lap|max_gap_displacement: 6 con_tracking_method|con_second_lap|max_split: 6 con_tracking_method|con_second_lap|max_merge: 6 con_tracking_method|con_second_lap|max_temporal: 6 con_tracking_method|con_second_lap|max_mitosis_distance: 6 con_tracking_method|con_second_lap|second_lap: Yes con_tracking_method|con_filter_by_lifetime|con_use_min|min_lifetime: 1 con_tracking_method|con_filter_by_lifetime|con_use_min|use_min: Yes con_tracking_method|con_filter_by_lifetime|con_use_max|max_lifetime: 100 con_tracking_method|con_filter_by_lifetime|con_use_max|use_max: Yes con_tracking_method|con_filter_by_lifetime|filter_by_lifetime: Yes con_tracking_method|display_option: Color and Number con_tracking_method|con_save_coded_img|name_output_img: OutputImage con_tracking_method|con_save_coded_img|save_coded_img: Yes con_tracking_method|tracking_method: LAP |
name: value |
common.cppipe value |
| Test-6 |
input_pipeline: common.cppipe object_to_track: DNA con_tracking_method|max_distance: 60 con_tracking_method|avg_diameter: 36.0 con_tracking_method|con_adv_parameter|cost: 11.0 con_tracking_method|con_adv_parameter|weight: 20.0 con_tracking_method|con_adv_parameter|adv_parameter: Yes con_tracking_method|con_filter_by_lifetime|con_use_min|use_min: No con_tracking_method|con_filter_by_lifetime|con_use_max|use_max: No con_tracking_method|con_filter_by_lifetime|filter_by_lifetime: Yes con_tracking_method|display_option: Color only con_tracking_method|con_save_coded_img|name_output_img: OutputImage con_tracking_method|con_save_coded_img|save_coded_img: Yes con_tracking_method|tracking_method: Follow Neighbors |
name: value |
common.cppipe value |