Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/devteam/table_recalibration/gatk_table_recalibration/0.0.5 (this tool) |
gatk_table_recalibration |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
gatk | 1.4 | package |
samtools | 0.1.18 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
gatk_param_type|gatk_param_type_selector: basic reference_source|input_bam: gatk/gatk_indel_realigner/gatk_indel_realigner_out_1.bam reference_source|reference_source_selector: history input_recal: gatk/gatk_count_covariates/gatk_count_covariates_out_1.csv analysis_param_type|analysis_param_type_selector: basic reference_source|ref_file: phiX.fasta |
output_bam: gatk_table_recalibration_out_1.bam output_log: gatk_table_recalibration_out_1.log.contains |
gatk/gatk_count_covariates/gatk_count_covariates_out_1.csv gatk/gatk_indel_realigner/gatk_indel_realigner_out_1.bam phiX.fasta gatk/gatk_table_recalibration/gatk_table_recalibration_out_1.bam gatk/gatk_table_recalibration/gatk_table_recalibration_out_1.log.contains |