Repository revision
7:ab12aca3ede9

Repository 'qiime_plot_taxa_summary'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/qiime_plot_taxa_summary

Make taxonomy summary charts tool metadata
Miscellaneous
based on taxonomy assignment (plot_taxa_summary)
qiime_plot_taxa_summary
toolshed.g2.bx.psu.edu/repos/iuc/qiime_plot_taxa_summary/qiime_plot_taxa_summary/1.9.1.0
1.9.1.0
MPLBACKEND="Agg" plot_taxa_summary.py --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/qiime_plot_taxa_summary/qiime_plot_taxa_summary/1.9.1.0 (this tool)
qiime_plot_taxa_summary
Requirements (dependencies defined in the <requirements> tag set)
name version type
qiime 1.9.1 package
Functional tests
name inputs outputs required files
Test-1 label_type: categorical
bar_width: 0.75
background_color: white
labels: phylum
type_of_file: png
x_width: 12
include_html_legend: False
dpi: 80
num_categories: 20
resize_nth_label: 0
y_height: 12
counts_fname: plot_taxa_summary/phylum.txt
chart_type: ['area', 'bar', 'pie']
attributes: name
attributes: name
attributes: name
plot_taxa_summary/phylum.txt
name
Test-2 label_type: categorical
bar_width: 0.75
background_color: white
labels: Phylum,Class,Genus
type_of_file: png
x_width: 12
include_html_legend: False
dpi: 80
num_categories: 20
resize_nth_label: 0
y_height: 12
counts_fname: ['plot_taxa_summary/phylum.txt', 'plot_taxa_summary/class.txt', 'plot_taxa_summary/genus.txt']
chart_type: ['area', 'bar', 'pie']
attributes: name
attributes: name
attributes: name
plot_taxa_summary/phylum.txt
plot_taxa_summary/class.txt
plot_taxa_summary/genus.txt
name
Test-3 label_type: categorical
bar_width: 0.75
background_color: white
labels: Class
type_of_file: svg
x_width: 12
include_html_legend: True
dpi: 80
num_categories: 10
resize_nth_label: 0
y_height: 12
counts_fname: plot_taxa_summary/class.txt
chart_type: pie
attributes: name
plot_taxa_summary/class.txt
name
Test-4 label_type: categorical
bar_width: 0.75
background_color: white
labels: Class
type_of_file: pdf
colorby: PC.636,PC.635
x_width: 12
include_html_legend: False
dpi: 80
num_categories: 20
resize_nth_label: 0
y_height: 12
counts_fname: plot_taxa_summary/class.txt
chart_type: ['area', 'bar', 'pie']
attributes: name
attributes: name
attributes: name
plot_taxa_summary/class.txt
name